Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11o17
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 44 3e-05
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 43 6e-05
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 42 8e-05
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 38 0.002
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.005
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 36 0.007
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 34 0.021
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 33 0.036
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 33 0.064
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.11
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.15
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 30 0.34
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 30 0.34
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 30 0.34
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 30 0.45
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.79
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 28 1.4
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.4
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 3.2
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 4.2
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 26 5.5
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 26 5.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 7.3
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 7.3
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 26 7.3
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = -1
Query: 250 KKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYG---ALNSCALCRTP 80
++ L+ ++P + + C C+E I P +CGHIFC C G + C LCR
Sbjct: 237 ERDLEDKNKLPFIPEGNRKCSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCRAF 296
Query: 79 FTKNTVVPL 53
+ + ++ L
Sbjct: 297 SSPSKIILL 305
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 42.7 bits (96), Expect = 6e-05
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
Frame = -1
Query: 397 PLQIGKNLTGIDYVHVRPAATASYAHLNLLGYITLLHAFVCCGQSVYLAKKHLDQLKEIP 218
PL++ + + D + P T++ + LL H + S A ++++
Sbjct: 102 PLELKEEICHDDCLSSSPPCTSALTEITLLP--PTFHNLIPSSSSYETAVAEFLHMEDLL 159
Query: 217 NE-VDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALNSCALCRT 83
E V E C C + P V CGH FC C AL C T
Sbjct: 160 QENVSRELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPT 205
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 42.3 bits (95), Expect = 8e-05
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -1
Query: 250 KKHLDQLKE-IPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGAL---NSCALCRT 83
+++L L E I + ++ + C+ C + I Q + CGH++C C L +SC +C+T
Sbjct: 1072 RRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKT 1131
Query: 82 PFTKN 68
KN
Sbjct: 1132 KLNKN 1136
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -1
Query: 241 LDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCC--YGAL---NSCALCRT 83
+D KE +E +E+ C C E I CVL C H CH C AL C C+T
Sbjct: 67 VDASKEEQDE--DEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFCKT 122
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = -1
Query: 232 LKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGAL---NSCALCR 86
L E ++ C C E + +P CGH +C++C L SC CR
Sbjct: 72 LLETFQKIKKTLECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCR 123
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = -1
Query: 193 CVACLEEILQPCVLQCGHIFCHQCCYGALNS------CALCRTPFTKNTVVPL 53
CV CL+ CGHIFC+ C AL + C +CR N V+ L
Sbjct: 206 CVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVICL 258
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = -1
Query: 211 VDNEKTCVACLEEILQPCVLQCGHIFCHQCCYGALNS---CALCRTP 80
+D+ C+ C E P + C H FC C L C CR P
Sbjct: 23 LDSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRAP 69
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 33.5 bits (73), Expect = 0.036
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -1
Query: 217 NEVD-NEKTCVACLEEILQPCVLQCGHIFCHQCC-YGALNSCALCRTPFTKNTVV 59
NE + N C AC E ++ V CG+ CC + A +C C TP+ TV+
Sbjct: 175 NEYESNLYECNACREIVIAGYVCDCGYCLHVYCCKHLAHVNCINCNTPWANATVI 229
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 32.7 bits (71), Expect = 0.064
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Frame = -1
Query: 193 CVACLEEILQPCVLQCGHIFCHQCC---YGALNSCALC 89
C+ C ++ P CGH FC QC Y +C C
Sbjct: 254 CLICKKDYRSPIATTCGHHFCEQCAITRYRKTPTCIQC 291
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 31.9 bits (69), Expect = 0.11
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = -1
Query: 295 LLHAFVCCGQSVYLAKKHLDQLKEIPNEVDNEKTCVACLE--EILQPC--VLQCGHIFCH 128
LL++ + + ++K L++ + ++ C+ CL E+ C + QC H F
Sbjct: 491 LLNSIIGIEKPPVASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHR 550
Query: 127 QCC----YGALNSCALCRTPFTKNTVVP 56
+C + NSC LCRT + P
Sbjct: 551 ECIDQWLTSSQNSCPLCRTKGVASASTP 578
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 31.5 bits (68), Expect = 0.15
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = -1
Query: 235 QLKEIPNE-VDNEKTCVACLEEI-LQPCVLQ--CGHIFCHQCCYGALN---SCALCRTPF 77
++++ P E +D E C C+E + V+Q C H F C L +CA+CR P
Sbjct: 381 KVQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440
Query: 76 TKNT 65
N+
Sbjct: 441 DPNS 444
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.3 bits (65), Expect = 0.34
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = -1
Query: 193 CVACLEEILQPCVLQ-CGHIFCHQCCYGALNS----CALCRTPFTKNTVVPL 53
C C E + ++ CGH FC+QC + + C +C F + V+P+
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPICGRGFGASDVIPI 678
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 30.3 bits (65), Expect = 0.34
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Frame = -1
Query: 250 KKHLDQLKEIPNEVDNEKTCVACLEEI-----LQPCVLQCGHIFCHQCCYGALN---SCA 95
K+ D + + N+ + TC C +++ Q + CGHIF C L +C
Sbjct: 88 KEAWDSFEPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCP 147
Query: 94 LCRTPFTKNTV 62
LCR TV
Sbjct: 148 LCRKEVPHETV 158
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 30.3 bits (65), Expect = 0.34
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -1
Query: 154 LQCGHIFCHQCCYG---ALNSCALCRTPFTKNTVV 59
+ CGH F + C N+C LCRT F K V+
Sbjct: 54 IPCGHYFHNHCLESWCRVANTCPLCRTEFLKVDVL 88
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 29.9 bits (64), Expect = 0.45
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -1
Query: 298 TLLHAFVCCGQSVYLAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 122
+L++ FV G+ + +D LK + C C E I P +L C H C C
Sbjct: 845 SLINQFVVTGKPIPSDILKIDTLKSFEALITECPIC--CNEPIQNPLLLNCKHACCGDC 901
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Frame = -1
Query: 193 CVACLEEILQPCVLQCGHIFCHQCCY----GALNSCALCR 86
C C +P L C H+FC C ++ C LCR
Sbjct: 360 CAICSNVAYKPVRLGCSHVFCLHCLIILQKQKVDFCPLCR 399
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 148 CGHIFCHQCC----YGALNSCALCRTPFTKNTVVPL 53
CGH FC C ++C C TPF+ + ++ +
Sbjct: 655 CGHAFCSNCMEPFYEHKTSTCPQCETPFSVSDILTI 690
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Frame = -1
Query: 223 IPNEVDNEKTCVACLEE---ILQPCVLQCGHIFCHQCCYGALN-----SCALCR 86
+P E CV +E I P CGH +C+ C L SC +C+
Sbjct: 185 VPQECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICK 238
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 158 CSSVWPYILPSMLLWRTKQLCIVQDTIYKEY 66
CSSV+ + L W +Q+C+ D I EY
Sbjct: 1109 CSSVFSSLADEELGWSAEQICLADDVI-NEY 1138
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 193 CVACLEEI-LQPCVLQCGHIFCHQC 122
C CLEE + + +CGH++C C
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSC 238
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 778 NWPIPYLNCY--HYSTVQKLFQYPLLLYKSFTTLKDLQTLGEE 656
N+PI +C S V+K PLLLY+ FT +K+ Q G E
Sbjct: 15 NYPIEIASCLVPQGSYVKK--GTPLLLYRFFTKVKEDQEDGSE 55
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Frame = -1
Query: 205 NEKTCVACLEEILQP-----CVLQCGHIFCHQCCYGALNS---CAL--CRTPFTKNTVVP 56
N C C E++ +CGH+FC C C + CR TK + P
Sbjct: 143 NNIACAKCGNELVSDEKKSIFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFIFP 202
Query: 55 L 53
L
Sbjct: 203 L 203
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 160 KVVIFPPSMQHMSFRYPLHW 219
K++ + ++Q +SF +PLHW
Sbjct: 694 KLIEYDIALQPVSFHHPLHW 713
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -1
Query: 619 KLPSYY-ARLASVLLSTFGENLT--RRFVNHVGKKIETNRSLRSEAQDLFLIAVKTLGDV 449
K+ Y+ A L S+++ G + R VN + I + D+F V LGD
Sbjct: 581 KIMGYFSAYLMSIVIPFTGVTASSRRETVNILSSSISV---IECAVNDVFYATVHALGDH 637
Query: 448 LPQIQSIHRALSY 410
L I S +R +SY
Sbjct: 638 LEIILSPYRQISY 650
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 667 LGEEYSGIVQVDDSYHKLPSYYARLASVLLSTFGENLTRRFVNH 536
+GE S ++V + +KLP Y A++ L T +L RR+V +
Sbjct: 247 IGEGASSFIRVINDRNKLPIYVAKVFRPPLDT---SLLRRYVRY 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,215
Number of Sequences: 5004
Number of extensions: 70619
Number of successful extensions: 216
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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