Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o16
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   7.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 227 WSLVFLNLGFFDVILTKTRRPNN 295
           W  VFL +G F V+L  T   N+
Sbjct: 3   WQRVFLAVGLFGVLLLLTNADNS 25


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 792 LDNEYEIDGLHFHWGD 745
           L ++YE+ GL F W D
Sbjct: 358 LASKYELHGLKFQWTD 373


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 457  VEPFSVQARQD*RQGESMRQLQSGVE 534
            VEP   QA    R+ E MR+   G+E
Sbjct: 1161 VEPTDKQANSKTRRQEMMREAGRGIE 1186


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = +3

Query: 348 DHG-NYPFETRKWAG 389
           DH  NYPF+  +W G
Sbjct: 64  DHTKNYPFDVDQWRG 78


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 242 RRPNSTTPNGTGLDTRSPKMTSSTSM 165
           RRP        G+ ++SP +T S +M
Sbjct: 583 RRPQRACSTTGGVPSKSPTLTHSPTM 608


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 221  PNGTGLDTRSPKMTSST 171
            P+G G+ T+  K+TSS+
Sbjct: 1123 PSGGGIYTKDTKITSSS 1139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,333
Number of Sequences: 438
Number of extensions: 5175
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)