Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11o14
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 29 0.32
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 27 1.3
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.2
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo... 26 3.9
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 25 6.8
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 6.8
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 6.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.0
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 29.5 bits (63), Expect = 0.32
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 431 IISQGGIQNNVVPEQFTANFDLRIALNVDLKEFE-NMIQKWCTEAGRGVTYEFEQKDPYT 255
++ Q QN+ + Q A + I L DL + NM + +G+ Y F Q +P
Sbjct: 33 MLQQLSEQNSELEPQNVAP-NAEIPLGFDLSGIQFNMTPDFYLRMNQGMDYAFNQPNPIA 91
Query: 254 TPTQL 240
TP QL
Sbjct: 92 TPQQL 96
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 1.3
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -3
Query: 431 IISQGGIQNNVVPEQFTANFDLRIAL-NVDLKEFENMIQKWCTEAGRGVTYEFEQKDPYT 255
++S G Q V + ++R + N+ L+ F QK E + T+E E K PY
Sbjct: 217 VVSAGSKQITVERGELEIEREMRARIYNIHLQIF----QKVQLETAKRWTFESEIKRPYF 272
Query: 254 TPTQLDDAN-IYWKAFKQTAEELG 186
+LD+A + W+ + E G
Sbjct: 273 HVKELDEAQLVNWRKYLDFEEVEG 296
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -3
Query: 500 LLRDRKTNTHLNIYNTVSTNLFHIISQGGIQNNVVPEQFTANFDLRIALNVDLKEFENMI 321
++R + ++L + +T L +SQ Q+ + EQF NFD N+ E N +
Sbjct: 452 IIRIESSASYLKTSFSATTYLRSRLSQFASQSPLFREQFLLNFD--FTYNLSESEVYNTV 509
Query: 320 QKWCTE 303
C E
Sbjct: 510 FNLCDE 515
>SPBC4B4.06 |vps25||ESCRT II complex subunit
Vps25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 3.9
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = -3
Query: 509 IAPLLRDRKTNTHLNIYNTVSTNLFHIISQGGIQNNVVPEQFTAN-FDLRIALNVDLKEF 333
I P L + + I+ T+ ++F I + ++ N+ N D+ + E+
Sbjct: 47 INPELLESSLLHNSTIHRTLPLSVFREIVEDMVKQNLAEWTEKRNPKDVFWVYWRSISEW 106
Query: 332 ENMIQKWCTEAGR--GVTYEFEQKDPYTTPTQLDDANIY 222
NMI KW ++ GR + +E ++ Y LD+ ++
Sbjct: 107 GNMILKWLSDMGREGSICTFYELQEQYKEVDCLDEVLLH 145
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 210 QTNRRGTGNVN*ASNVYGRHRQPLS 136
+T+ GT N+N +N+ G +QPLS
Sbjct: 175 RTDYPGTENMNIPTNIDGGSKQPLS 199
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 211 SNKPQRNWECQLSLKRLREAPTAAIFGNLASRRW 110
SN P N K+LR A T+AI + RW
Sbjct: 95 SNSPTANEALDSDAKKLRSALTSAILVEKPNVRW 128
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = -3
Query: 356 LNVDLKEFENMIQKWCTEAGRGVT------YEFEQKDPYTTPTQLDDANIYWKAFKQTAE 195
L++ L ++I+K+ EA +T Y KD Y L AN++ +AF +
Sbjct: 862 LHLLLVSMNHLIKKYYLEARLSLTVHDEVRYLSSDKDKYRVAFALQVANLWTRAF--FCQ 919
Query: 194 ELGMSIKPQT 165
LG++ PQ+
Sbjct: 920 RLGINELPQS 929
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 509 IAPLLRDRKTNTHLNIYNTVSTNLFHIISQGGIQNNVVPEQF 384
+ PLL D NT +N+Y S N I + IQ+ ++F
Sbjct: 51 LIPLLLDFLRNTEVNLYRNSSVNELKIEALTLIQSCAHRDEF 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,958
Number of Sequences: 5004
Number of extensions: 42608
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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