Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11o11
(263 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 25 2.3
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 25 2.3
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 24 3.0
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 23 5.3
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 23 5.3
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 23 5.3
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 23 5.3
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 23 5.3
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 23 7.0
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 23 7.0
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 9.2
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 23 9.2
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 23 9.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 23 9.2
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 24.6 bits (51), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 101 IGPSPPCARVRFGRSESCVHPPLL 172
+G SPP + RSE V+ PLL
Sbjct: 273 VGVSPPAGNFVYKRSEENVNRPLL 296
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 2.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 106 SFTSLRTGPVWAIGILRSPSTAGGTFLGAITDNTPSEDSRDSTDS 240
+++S+ P+ A R G F +++PSE D TDS
Sbjct: 314 NYSSISAIPIPANSFKRRSKKNGLRFKAGEAESSPSESGSDLTDS 358
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 24.2 bits (50), Expect = 3.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 179 PSWVRLQTTHHLKTAGTPQIQ 241
P W++L +T L TP+IQ
Sbjct: 643 PDWIKLSSTRSLFRFHTPKIQ 663
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 23.4 bits (48), Expect = 5.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 157 SPSTAGGTFLGAITDNTPSEDSRDSTDSAVQP 252
+PS A GT G I EDS D++ ++P
Sbjct: 300 TPSFASGTENGVINVWRLDEDSNDNSMGIIKP 331
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 23.4 bits (48), Expect = 5.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 142 IGILRSPSTAGGTFLGAITDNT 207
IG + PS+ T L A+TD T
Sbjct: 7 IGFVGKPSSGKSTMLNALTDAT 28
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.4 bits (48), Expect = 5.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 194 IAPRKVPPAVEGERKIPIAQTGPVRKEVKDQSN 96
I PR PPA R++ I +GP DQ N
Sbjct: 1745 IVPR--PPAERTGRRVAIIGSGPAGLAAADQLN 1775
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 23.4 bits (48), Expect = 5.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 194 IAPRKVPPAVEGERKIPIAQTGPVRKEVKDQSNGD 90
++P K P E E +PI GP ++ + +SN +
Sbjct: 634 MSPTKAPQVFESESNVPI-NNGP-QQSIDKESNSN 666
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 23.4 bits (48), Expect = 5.3
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 140 RSESCVHP---PLLAAPSWVRLQTTHHLKTAGTPQIQPYSP 253
+S + HP P + +PS Q HH ++ + + P SP
Sbjct: 97 QSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSP 137
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 23.0 bits (47), Expect = 7.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -1
Query: 260 LPEGCTAESVES--RLSSDGV---LSVIAPRKVPPAVEGERKI 147
+P+G E ++S +LS + +S+I P PP +G+R I
Sbjct: 148 IPKGIGNEFIQSLHKLSVGEITDPISLILPENTPPMDKGQRTI 190
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 23.0 bits (47), Expect = 7.0
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = -3
Query: 231 GVPAVFRWCVVCNRTQEG 178
GVP + WC+ C G
Sbjct: 420 GVPLLLHWCINCRSIFSG 437
>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 22.6 bits (46), Expect = 9.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 128 VRFGRSESCVHPPLLAAPSWVRLQTTHHLKTAGT 229
++ + CV P SW+RLQ + TAGT
Sbjct: 7 IKAKKDYDCVFEP--EPMSWLRLQYYRYQVTAGT 38
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 22.6 bits (46), Expect = 9.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 91 SPLDWSFTSLRTGPVWAIGILRSPSTAGGTFL 186
+P+D + +RTGP+ + IL + A +FL
Sbjct: 126 TPIDEILSCVRTGPIESAWILPEKNCAFISFL 157
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 22.6 bits (46), Expect = 9.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 88 LSPLDWSFTSLRTGPVWAIGILRSPSTAGGTF 183
++P+ +F++ TG +W+ + P TA TF
Sbjct: 645 IAPIINTFSNNWTGILWSNYAIYDPKTAYNTF 676
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 22.6 bits (46), Expect = 9.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 164 PLLAAPSWVRLQTTHHLKTAGTPQIQPYSPPA 259
P +A+P ++ T+H TA ++ P P+
Sbjct: 921 PAIASPPPPKVGETYHPPTASGTRVPPVQQPS 952
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,093,422
Number of Sequences: 5004
Number of extensions: 18732
Number of successful extensions: 50
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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