Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o11
         (263 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.36 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   1.1  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    21   3.4  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    21   3.4  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    21   3.4  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    21   3.4  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    21   3.4  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    21   3.4  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    21   3.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   3.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   3.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   3.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   3.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   3.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   3.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   3.4  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   3.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   3.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   4.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   5.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   5.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    19   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 0.36
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 247  VRLNLWSPGCLQMVCCL*SHPGRCRQQW 164
            + LN WS G   M+  +  H  + +Q+W
Sbjct: 1479 LHLNAWSDGGCPMIYFVVEHKKKNQQEW 1506


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 144 RNLAFTLHCWRHLPGCDYRQ 203
           R+  + L  W+ LP C Y+Q
Sbjct: 251 RDAFYGLPLWKLLPTCAYKQ 270


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 371 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 399


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 356 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 384


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 123
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 49  FNYLHSHSVIF 17
           F+YLHS ++I+
Sbjct: 479 FDYLHSRNIIY 489


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 150 LAFTLHCWRHLP 185
           L  TLH W H P
Sbjct: 466 LCNTLHHWHHCP 477


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +2

Query: 107 PSPPCARVRFGRSESCVHPPLLAAPSWVRLQTTHHLKTAG 226
           P P C     G      H PLLA PS+ +      L + G
Sbjct: 332 PEPDCIHELLG------HMPLLADPSFAQFSQEIGLASLG 365


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 176 APSWVRLQTTHHLKTAG 226
           A SW RL + H L   G
Sbjct: 85  AQSWQRLTSLHELHVHG 101


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 206 HHLKTAGTPQIQPY 247
           HH   AG+ Q  PY
Sbjct: 64  HHYGAAGSQQDMPY 77


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 103 WSFTSLRTGPVWAIG 147
           W    +   PVWAIG
Sbjct: 156 WDNVVVAYEPVWAIG 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,315
Number of Sequences: 438
Number of extensions: 1649
Number of successful extensions: 28
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)