Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o10
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       28   1.8  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    28   1.8  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        28   1.8  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   1.8  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   4.1  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   4.1  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   7.2  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    25   9.5  

>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 617 YCIVLKILICIKHIWYMY 670
           YC+ +K+LI + + WY+Y
Sbjct: 42  YCLAVKLLIYLLYCWYIY 59


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 617 YCIVLKILICIKHIWYMY 670
           YC+ +K+LI + + WY+Y
Sbjct: 42  YCLAVKLLIYLLYCWYIY 59


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 617 YCIVLKILICIKHIWYMY 670
           YC+ +K+LI + + WY+Y
Sbjct: 42  YCLAVKLLIYLLYCWYIY 59


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 617 YCIVLKILICIKHIWYMY 670
           YC+ +K+LI + + WY+Y
Sbjct: 42  YCLAVKLLIYLLYCWYIY 59


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 542 YLNIIMATLNKKSNKSKAYSFFK*IYCIVLKILICIKHIWYM 667
           Y  ++    N +    KA+S+F  + C    I +C  HI Y+
Sbjct: 649 YRELMEDAENWQCQHCKAFSYFSQVACSCKSITVCPLHIEYL 690


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 122 KSQILQSECITSFWQKYSESWCTHVTL 42
           K +ILQ E + S  Q+YS+SW + +TL
Sbjct: 140 KRKILQQEWL-SLNQRYSDSWPSKITL 165


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 220 YLSEIQIVLLLIITCYDVKC 161
           ++  + I ++LI+TCY V C
Sbjct: 192 WIHTVMIYIILIVTCYTVYC 211


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 460 TKYFNNLQLYLYNKLIFRITICNC 531
           T++ N L L + NK +FR +  NC
Sbjct: 3   TRHCNRLGLQIENKFVFRSSSWNC 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,930
Number of Sequences: 5004
Number of extensions: 54583
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)