Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o08
         (121 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   1.5  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    19   3.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    19   6.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    19   6.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    19   6.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    19   6.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    18   8.1  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 51  AIRTGLARFYEVRFDQL 101
           A+    A FYE R+D L
Sbjct: 12  AVSAAPAEFYESRYDHL 28


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 102 PVDQNEPHKI*LILFGLQYKCVK*KY 25
           P D  +P    L+ F L + C+   Y
Sbjct: 155 PFDYKQPVVFDLVYFILAFACISIAY 180


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 1   LLIKSKQVIFLFNTF 45
           LL+K  +V F F  F
Sbjct: 318 LLVKEGEVAFFFTQF 332


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 1   LLIKSKQVIFLFNTF 45
           LL+K  +V F F  F
Sbjct: 318 LLVKEGEVAFFFTQF 332


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 1   LLIKSKQVIFLFNTF 45
           LL+K  +V F F  F
Sbjct: 318 LLVKEGEVAFFFTQF 332


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 1   LLIKSKQVIFLFNTF 45
           LL+K  +V F F  F
Sbjct: 318 LLVKEGEVAFFFTQF 332


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -3

Query: 53  CSTNVLNKNITCL 15
           CSTN      TC+
Sbjct: 103 CSTNPCENQATCV 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,277
Number of Sequences: 336
Number of extensions: 283
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 20
effective length of database: 115,865
effective search space used:  2201435
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)