Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11o06
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537... 30 1.0
10_08_0457 + 18076911-18077272,18077356-18077475,18077554-180777... 28 4.0
02_02_0564 - 11526906-11527171,11527509-11527683,11527762-11527773 28 4.0
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262... 27 5.3
08_02_0402 - 16769239-16769504,16769842-16770016,16772762-167730... 27 7.1
07_03_1505 - 27046018-27046283,27046621-27046795,27048157-270481... 27 7.1
04_04_0472 + 25494548-25494559,25494638-25494812,25495150-25495415 27 7.1
03_06_0246 + 32622793-32622804,32622883-32623057,32623395-326236... 27 7.1
03_02_0850 + 11775232-11776077,11776761-11777321 27 7.1
06_01_1196 + 10289708-10289823,10290828-10291541,10291614-102920... 27 9.3
05_01_0550 + 4820086-4821255,4822112-4822321,4822429-4822524,482... 27 9.3
>02_05_0356 +
28252154-28252897,28253171-28253377,28253473-28253710,
28254853-28255220
Length = 518
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 228 RRSFIGWTKFSYSTKIAEDIVNKQVQHSIQFGS 130
+ SFIGW FSY I + QV H FGS
Sbjct: 454 KNSFIGWISFSYLLGIVAIELWSQVFHHYVFGS 486
>10_08_0457 +
18076911-18077272,18077356-18077475,18077554-18077782,
18077993-18078652,18079224-18079425,18079521-18079611,
18079780-18079837
Length = 573
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -2
Query: 341 QSTLIHNATYGPSPVKQSDRRPAENTI*KPTLNRHLKIVGASSAGQNLAIQQRLLKISST 162
Q TL+H+ +P Q+ RRP I K G +S ++ + +R LK+ S
Sbjct: 363 QGTLLHSPLMAETPAMQTPRRPLPTQIEKLETTS-----GQTSEARSASSARRSLKMFSP 417
Query: 161 SK 156
SK
Sbjct: 418 SK 419
>02_02_0564 - 11526906-11527171,11527509-11527683,11527762-11527773
Length = 150
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 127 WTSQEPILMIHSSRLHHPL*VRSNHLIHSLHI 32
WTS E +L+ + L + V+ HLI ++H+
Sbjct: 78 WTSHECLLLPYEQALPENIRVKLTHLIRAVHV 109
>11_06_0410 -
23223701-23223714,23223863-23225159,23225314-23226225,
23226952-23227023,23227323-23227471,23227879-23227912
Length = 825
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -2
Query: 386 SLFCHL*INKSKLIIQ--STLIHNATYGPS 303
+LFCH I KSKL Q S N+T GPS
Sbjct: 758 ALFCHCGIEKSKLWQQQKSANFRNSTPGPS 787
>08_02_0402 -
16769239-16769504,16769842-16770016,16772762-16773028,
16773156-16773368
Length = 306
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 127 WTSQEPILMIHSSRLHHPL*VRSNHLIHSLHI 32
WTS E +L+ + L + V+ HLI ++H+
Sbjct: 234 WTSHECLLLPYEQALPENIRVKLPHLIRAVHV 265
>07_03_1505 -
27046018-27046283,27046621-27046795,27048157-27048166,
27048446-27048639
Length = 214
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 127 WTSQEPILMIHSSRLHHPL*VRSNHLIHSLHI 32
WTS E +L+ + L + V+ HLI ++H+
Sbjct: 142 WTSHECLLLPYEQALPENIRVKLPHLIRAVHV 173
>04_04_0472 + 25494548-25494559,25494638-25494812,25495150-25495415
Length = 150
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 127 WTSQEPILMIHSSRLHHPL*VRSNHLIHSLHI 32
WTS E +L+ + L + V+ HLI ++H+
Sbjct: 78 WTSHECLLLPYEQALPENIRVKLPHLIRAVHV 109
>03_06_0246 +
32622793-32622804,32622883-32623057,32623395-32623659,
32624594-32624693,32625076-32625125,32625239-32625293,
32625742-32625774
Length = 229
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 127 WTSQEPILMIHSSRLHHPL*VRSNHLIHSLHI 32
WTS E +L+ + L + V+ HLI ++H+
Sbjct: 78 WTSHECLLLPYEQALPENIRVKLPHLIRAVHV 109
>03_02_0850 + 11775232-11776077,11776761-11777321
Length = 468
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 251 TLNRHLKIVGASSAGQNLAIQQRLL 177
+ NRH K+V + A ++ A+Q+RLL
Sbjct: 165 SFNRHSKVVPPARASEDRALQRRLL 189
>06_01_1196 +
10289708-10289823,10290828-10291541,10291614-10292058,
10292329-10293642
Length = 862
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 200 LAIQQRLLK--ISSTSKFNIQYNLEALDITGTNSDD 99
+AIQ R L+ I S NI+YNL D+T T +D+
Sbjct: 107 IAIQIRNLRTRIEEVSTRNIRYNLIENDLTCTTTDE 142
>05_01_0550 +
4820086-4821255,4822112-4822321,4822429-4822524,
4822610-4822828,4823201-4823395,4823466-4823612,
4823712-4823861,4825015-4825145,4825234-4825477
Length = 853
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 140 NLEALDITGTNSDDT--FKQIAPSTVSPFQSS 51
N A+D+ ++DD K+I+ T+ PFQSS
Sbjct: 436 NTFAVDVVSVDADDLQMAKKISSYTIGPFQSS 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,926,576
Number of Sequences: 37544
Number of extensions: 194827
Number of successful extensions: 475
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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