Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o06
         (453 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY084162-1|AAL89900.1|  331|Drosophila melanogaster RE37150p pro...    29   2.9  
AE014296-1729|AAF50210.2| 1392|Drosophila melanogaster CG32046-P...    29   2.9  
AY094737-1|AAM11090.1|  828|Drosophila melanogaster GH28553p pro...    28   6.8  
AY069285-1|AAL39430.1|  468|Drosophila melanogaster GM14141p pro...    28   6.8  
AE014297-3729|AAF56407.3|  828|Drosophila melanogaster CG11848-P...    28   6.8  
AE014297-1570|AAF54852.1|  468|Drosophila melanogaster CG6054-PA...    28   6.8  
AE014297-1506|AAF54799.2|  449|Drosophila melanogaster CG10097-P...    27   8.9  
AE014297-1505|AAZ52528.1|  501|Drosophila melanogaster CG10097-P...    27   8.9  

>AY084162-1|AAL89900.1|  331|Drosophila melanogaster RE37150p
           protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = -1

Query: 300 RETIGSTTCGKYNLKTDA*PPS*NRRSFIGW 208
           R TI STT   YN +  A  P   RRS IGW
Sbjct: 203 RHTIISTTLTNYNQQLAAAFPDATRRSSIGW 233


>AE014296-1729|AAF50210.2| 1392|Drosophila melanogaster CG32046-PA,
            isoform A protein.
          Length = 1392

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = -1

Query: 300  RETIGSTTCGKYNLKTDA*PPS*NRRSFIGW 208
            R TI STT   YN +  A  P   RRS IGW
Sbjct: 1264 RHTIISTTLTNYNQQLAAAFPDATRRSSIGW 1294


>AY094737-1|AAM11090.1|  828|Drosophila melanogaster GH28553p
           protein.
          Length = 828

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 242 RHLKIVGASSAGQNLAIQQRLLKISSTSKF 153
           +H K    + A  N AIQ+RL+  SSTS F
Sbjct: 381 QHHKCNNGNDAQSNPAIQKRLMATSSTSNF 410


>AY069285-1|AAL39430.1|  468|Drosophila melanogaster GM14141p
           protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 203 NLAIQQRLLKISSTSKFNIQYNLE--ALDITGTNSDDTFKQIAPS 75
           N+  Q  + ++   +  N+Q +LE    D+ G N+D TF+++ P+
Sbjct: 233 NMDRQMSVFELFPETLLNLQDDLEKQGSDLAGVNADFTFRELKPT 277


>AE014297-3729|AAF56407.3|  828|Drosophila melanogaster CG11848-PA
           protein.
          Length = 828

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 242 RHLKIVGASSAGQNLAIQQRLLKISSTSKF 153
           +H K    + A  N AIQ+RL+  SSTS F
Sbjct: 381 QHHKCNNGNDAQSNPAIQKRLMATSSTSNF 410


>AE014297-1570|AAF54852.1|  468|Drosophila melanogaster CG6054-PA
           protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 203 NLAIQQRLLKISSTSKFNIQYNLE--ALDITGTNSDDTFKQIAPS 75
           N+  Q  + ++   +  N+Q +LE    D+ G N+D TF+++ P+
Sbjct: 233 NMDRQMSVFELFPETLLNLQDDLEKQGSDLAGVNADFTFRELKPT 277


>AE014297-1506|AAF54799.2|  449|Drosophila melanogaster CG10097-PA,
           isoform A protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = -2

Query: 134 EALDITGTNSDDTFKQIAPSTVSPFQSSHTF 42
           + LD+  + S +TF+++AP+ +  F +++T+
Sbjct: 126 KVLDMHNSVSSETFEKMAPALIGKFPNTYTY 156


>AE014297-1505|AAZ52528.1|  501|Drosophila melanogaster CG10097-PB,
           isoform B protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = -2

Query: 134 EALDITGTNSDDTFKQIAPSTVSPFQSSHTF 42
           + LD+  + S +TF+++AP+ +  F +++T+
Sbjct: 178 KVLDMHNSVSSETFEKMAPALIGKFPNTYTY 208


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,657,639
Number of Sequences: 53049
Number of extensions: 343987
Number of successful extensions: 722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)