Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11o06
(453 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical ... 31 0.39
AF016420-2|AAB65306.1| 291|Caenorhabditis elegans Serpentine re... 29 2.1
Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 27 8.4
U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonin... 27 8.4
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin... 27 8.4
>AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical
protein Y40C7B.5 protein.
Length = 610
Score = 31.1 bits (67), Expect = 0.39
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = -2
Query: 314 YGPSPVKQSDRRPAENTI*KPTLNRHLKIVGASSAGQNLAIQQRLLKI------SSTSKF 153
+ PSP+++S P +I KP+L + ++ + QNL + ++ S + +
Sbjct: 77 FKPSPLQRSIEPPKTPSINKPSLIKKPSVI-LPNPPQNLVVSNLIVSYLQDNSDKSNAGY 135
Query: 152 NIQYNLEALDITGTNSDDTFKQ 87
+I+YN E T N D +F Q
Sbjct: 136 SIRYNKEDKKYTIGNKDVSFNQ 157
>AF016420-2|AAB65306.1| 291|Caenorhabditis elegans Serpentine
receptor, class sx protein12 protein.
Length = 291
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 416 FLFFIV-INFNSLFCHL*INKSKLIIQSTLI 327
F FF++ I NSLF HL K KL +STL+
Sbjct: 16 FSFFVIGIVGNSLFIHLIFKKQKLRSRSTLL 46
>Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical
protein H39E23.1c protein.
Length = 1062
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 253 GFQIVFSAGRRSDCFTGEGPYVA 321
GF FS G + D F G PY A
Sbjct: 182 GFSNTFSLGNKLDTFCGSPPYAA 204
>Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical
protein H39E23.1b protein.
Length = 1096
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 253 GFQIVFSAGRRSDCFTGEGPYVA 321
GF FS G + D F G PY A
Sbjct: 264 GFSNTFSLGNKLDTFCGSPPYAA 286
>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 253 GFQIVFSAGRRSDCFTGEGPYVA 321
GF FS G + D F G PY A
Sbjct: 312 GFSNTFSLGNKLDTFCGSPPYAA 334
>Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical
protein H39E23.1c protein.
Length = 1062
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 253 GFQIVFSAGRRSDCFTGEGPYVA 321
GF FS G + D F G PY A
Sbjct: 182 GFSNTFSLGNKLDTFCGSPPYAA 204
>Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical
protein H39E23.1b protein.
Length = 1096
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 253 GFQIVFSAGRRSDCFTGEGPYVA 321
GF FS G + D F G PY A
Sbjct: 264 GFSNTFSLGNKLDTFCGSPPYAA 286
>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 253 GFQIVFSAGRRSDCFTGEGPYVA 321
GF FS G + D F G PY A
Sbjct: 312 GFSNTFSLGNKLDTFCGSPPYAA 334
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 124 TSQEPILMIHSSRLHHPL*VRSNHLIHSLHIFFNSNINL 8
T+ EP+ ++R+HHP+ V+ N + + NSN+ L
Sbjct: 102 TTAEPLPSPAATRIHHPIPVQYNTDLIAAATSVNSNVIL 140
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 124 TSQEPILMIHSSRLHHPL*VRSNHLIHSLHIFFNSNINL 8
T+ EP+ ++R+HHP+ V+ N + + NSN+ L
Sbjct: 102 TTAEPLPSPAATRIHHPIPVQYNTDLIAAATSVNSNVIL 140
>U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1096
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 253 GFQIVFSAGRRSDCFTGEGPYVA 321
GF FS G + D F G PY A
Sbjct: 264 GFSNTFSLGNKLDTFCGSPPYAA 286
>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1192
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 253 GFQIVFSAGRRSDCFTGEGPYVA 321
GF FS G + D F G PY A
Sbjct: 312 GFSNTFSLGNKLDTFCGSPPYAA 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,844,263
Number of Sequences: 27780
Number of extensions: 185816
Number of successful extensions: 401
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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