Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o04
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    29   0.36 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   3.3  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   5.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.7  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 185  FEVT-LSPFPSDAPLTSMDVERALSFAPRRGTAVFKSSG 72
            FEV  LS FPSD   T   +ER+     R GTAVF+S+G
Sbjct: 1371 FEVNGLSHFPSDIEDT---IERSHPRIARGGTAVFQSAG 1406


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 17  LSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEE 151
           +S Q     N +T   NS +++       AE SST  + PY S +
Sbjct: 155 ISSQQKFHGNDKTLEKNSAKATINKSNSTAETSSTATVEPYDSND 199


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +1

Query: 19  KRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRS 198
           +RP + +S +  ++  QP   ++ +V       N RS+S+L    S  +  S TSN +  
Sbjct: 748 QRPSSSMSLYGEYNKSQPQLSMQRSVSPNPLGPNRRSSSVL---QSQKSTSSNTSNRNNG 804

Query: 199 SHLGMAAH*SLNYR 240
            + G      + +R
Sbjct: 805 GYSGSRPSSEMGHR 818


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 66   TASRALEDRGATTRSEAQRAL 128
            +AS  LEDR A  ++EAQR +
Sbjct: 1221 SASSNLEDRAARIKAEAQRRM 1241


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 430 SSGTSSIPKFHSSLQDLKQPSLQEPR 353
           S  T+S  K H S   LK+ S  EPR
Sbjct: 255 SDETNSFSKLHQSQFGLKEESSHEPR 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,413
Number of Sequences: 5004
Number of extensions: 29626
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)