Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o03
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   4.9  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.6  

>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = -2

Query: 273 ASSVNPVRLRL-MPSRSYEHSSLRRDASAALH 181
           ++++NPV+  L MP +++EHS L R + AALH
Sbjct: 635 SAALNPVQNPLLMPQQNHEHSPLVR-SDAALH 665


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 563 SGSIIVRDSICHIWSSGK*SCKTAPAGAL 477
           +G +IV+D + +IW  GK + K     AL
Sbjct: 95  TGQMIVKDMLQYIWPKGKTNLKVRVVSAL 123


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 703 NDNSGFTRQSAFGYCGXRSFDEVPEE-PAASDP-YHDXLVPV 584
           NDN   TR+S++      +F++ PEE P AS+P  H    P+
Sbjct: 252 NDNDSQTRRSSWSSIA-SAFNDFPEEFPNASNPEAHSNFTPL 292


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
 Frame = -2

Query: 420 GFSRPAP-PSXDTHTVRA------RLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSV 262
           G   P+P  S D+H  R+      R RSSR   S  P++RSR   +  SR    +   S 
Sbjct: 127 GSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSR 186

Query: 261 NPVRLRLMPSRS-----YEHSSLRRDASAALHRTPATLVLAELQQNNRCEEERPWRSM 103
           +  R     SRS     Y++  LR D  +  H    +      + +   EEER  R++
Sbjct: 187 SRRRYEERSSRSSRAHDYDYEDLRDDDRS--HERKRSRSRPRERSSKLSEEERDRRTV 242


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = -2

Query: 504  LQDRASRSAHRAMEKVNSFVGS--VHQRLRGFSRPAPPSXDTHTVRARLRSSRRWMSAPP 331
            L+DRA+R    A  ++N  + +  +  R +G   PAP +  T T  A   + +     P 
Sbjct: 1226 LEDRAARIKAEAQRRMNERLAALGIKPRQKGTPSPAPVNSATSTPVAAPTAQQ---IQPG 1282

Query: 330  TARSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSSLR 205
               S    N P+     +   +V P      P++    ++++
Sbjct: 1283 KQASAVSSNVPAVSASISTPPAVVPTVQHPQPTKQIPTAAVK 1324


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
 Frame = -2

Query: 525  LEQWQIELQD------RASRSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSXDTHTVRARL 364
            + QW+ +L+       + S+   R     +SF   +H+     S   P S DT+    R 
Sbjct: 1601 VSQWKAKLEALTDGCIKCSQKYGRNSRSRSSFYSLIHESFSRSSEVLPTSSDTNLDAKRA 1660

Query: 363  RSSRRWM-SAPPTARS 319
              +   M   PPTA +
Sbjct: 1661 EEAEMIMIETPPTAEA 1676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,221
Number of Sequences: 5004
Number of extensions: 55032
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)