Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11o03
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 31 1.3
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 30 2.2
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514... 30 2.2
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 29 3.9
02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420 29 3.9
10_06_0123 + 11010115-11010434,11011848-11012331 29 5.1
02_05_1275 - 35395228-35395642,35396682-35397250 29 5.1
02_01_0780 - 5818597-5819181 29 5.1
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 6.8
09_03_0074 + 12103454-12103613,12104102-12104183,12105145-121052... 28 6.8
03_03_0059 + 14149796-14150350,14152303-14152433,14153479-141535... 28 6.8
09_03_0045 - 11860245-11860450,11861539-11861725 28 9.0
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123 28 9.0
02_02_0005 - 6016429-6017955 28 9.0
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 232 EKLRA--FISATRCECSPAPDTSDVGAGGTPAEQSV*GRASLEKHGQATLLTNS 77
+KLR+ ++ A E +P P + GAG +P E V A L +H + L S
Sbjct: 51 DKLRSLGYLEADHPEAAPGPAAPEAGAGASPGEIFVPTPAQLPRHRVGSTLDPS 104
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -1
Query: 337 APDSKESCRVQRAEPGKEMCVRIVGKSSETTADAIEKLRAFISATRC----ECSPAPDTS 170
A ++KE+ R QR + +M + + +S A+ E F+ AT C E P TS
Sbjct: 353 ATEAKET-RHQREKVYNDMMNKRIRESRRGQAERFEDWATFMEATICHTMKEMLPGVSTS 411
Query: 169 DVGAGG 152
D G GG
Sbjct: 412 DNGMGG 417
>03_03_0025 +
13848450-13849420,13850921-13851131,13851327-13851459,
13851576-13851832
Length = 523
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 141 SAGVPPAPTSLVSGAGLHSHRVAEMNARSFSMASAVVS 254
++G PP P + + A + + RVA NA FSMA AV S
Sbjct: 60 ASGGPPTPPAAAAAAPV-TIRVATFNAAMFSMAPAVPS 96
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 324 RSRAECNAPSRGRKCACASSVNPVRLRLMPSRSYEHSS 211
RS+ C PS G + ASSV PVR + H S
Sbjct: 37 RSKVTCGFPSVGASSSLASSVEPVRATATQAPLATHQS 74
>02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420
Length = 256
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/80 (28%), Positives = 31/80 (38%)
Frame = +1
Query: 277 RTFPSPARRVALGTTPCCRGR*HPPTTASETSSHCVSVXARWRWSREASQPLVDGTYETV 456
+T P+R L R H T T + S AR S A+ P D +
Sbjct: 92 KTATPPSRLPGLSRAATKSARRHSSITRFYTRTAPPSDAARTAISSPAALPATDAASRSP 151
Query: 457 HLLHGAVSAPAGAVLQLYLP 516
H+ H +APA A +LP
Sbjct: 152 HVGHVGRAAPAAAERLQHLP 171
>10_06_0123 + 11010115-11010434,11011848-11012331
Length = 267
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/85 (29%), Positives = 33/85 (38%)
Frame = -2
Query: 498 DRASRSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSXDTHTVRARLRSSRRWMSAPPTARS 319
D+A R AH+ + V+ FV G SR A P T R S+R + A
Sbjct: 68 DKARRLAHQMEDCVDRFVYDQLTAAHGSSRHAAPLGSRPTA-LREESARLYELKTKYAGP 126
Query: 318 RAECNAPSRGRKCACASSVNPVRLR 244
A PS +K + S P R
Sbjct: 127 MAATGPPSAAKKSSAMSEPVPALRR 151
>02_05_1275 - 35395228-35395642,35396682-35397250
Length = 327
Score = 28.7 bits (61), Expect = 5.1
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 160 HQRRWC--PVQGCTRIASQR*MLVASRWHQP*SHWIYRRCARTFPSPARRVALGTTPCCR 333
H R C PV G A L A RW Q H +Y C P R +L TP CR
Sbjct: 260 HAPRTCAAPVAGDLTAAQ----LAAMRWAQR-FHMVYNYCY----DPKRDHSL--TPECR 308
Query: 334 GR*HPPTTASETSS 375
HP +++S +SS
Sbjct: 309 THLHPSSSSSNSSS 322
>02_01_0780 - 5818597-5819181
Length = 194
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 336 PPTARSRAECNAPSRGRKCA 277
P AR+RA C+A +RGR+ A
Sbjct: 162 PDNARARARCSASARGRRAA 181
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 114 RDALPHTDCSAGVPPAPTSLVSGAGLHSHRVAEMNARSFSMASAVVS 254
R+A D S G P+PT + SGAG H + + + + A+ S
Sbjct: 145 REAGSEDDGSRGYTPSPTPVKSGAGSHVSPIRQQDVAVANTLLAISS 191
>09_03_0074 +
12103454-12103613,12104102-12104183,12105145-12105200,
12105671-12106048,12106402-12106565
Length = 279
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 342 SAPPTARSRAECNAPSRGRKCACASSVNPV 253
+APP R R RGR+C A+++ PV
Sbjct: 140 TAPPAERRRRPTLLQRRGRRCRAAAALPPV 169
>03_03_0059 +
14149796-14150350,14152303-14152433,14153479-14153520,
14153632-14153740,14154262-14154340,14154437-14154733,
14154820-14154932,14155375-14155482,14155554-14155616,
14155698-14155865,14156283-14156348
Length = 576
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/53 (39%), Positives = 23/53 (43%)
Frame = -2
Query: 456 NSFVGSVHQRLRGFSRPAPPSXDTHTVRARLRSSRRWMSAPPTARSRAECNAP 298
NS V S R GF RP PP +RA L +RR S P S E P
Sbjct: 80 NSSVASTPAR-GGFKRPFPPPSPAKHIRALL--ARRHGSVKPNEASIPESGEP 129
>09_03_0045 - 11860245-11860450,11861539-11861725
Length = 130
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 495 RASRSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSXDTH 382
+A RA E+V + VG+VH ++ S P + D H
Sbjct: 28 KAPNLFERAKEEVEALVGAVHDKMEHNSSPHGNNADLH 65
>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
Length = 422
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Frame = -2
Query: 351 RWMSAPPTARSRAECNAPSRGRKCACASS------VNPVRLRLMPSRS 226
R +S+P A++ A N ++GR+C+ + S V+P++ RL +RS
Sbjct: 341 RLVSSPGKAQAAASNNNNNKGRRCSFSPSRLATRLVSPIKARLSLNRS 388
>02_02_0005 - 6016429-6017955
Length = 508
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 480 AHRAMEKVNSFVGSVHQRLRGFSRPAPPSXDTHTV 376
AHRAMEK S S+ Q +R F+ P + + TV
Sbjct: 466 AHRAMEKGGSSYESLTQLIRRFTLQEPKNSSSITV 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,912,320
Number of Sequences: 37544
Number of extensions: 461089
Number of successful extensions: 1901
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1901
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -