Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o03
         (742 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1447|AAN09260.1| 1506|Drosophila melanogaster CG32681-P...    31   1.6  
BT009945-1|AAQ22414.1|  341|Drosophila melanogaster RH72958p pro...    30   2.9  
AE014298-1546|AAF47994.1|  341|Drosophila melanogaster CG2076-PA...    30   2.9  
AY113261-1|AAM29266.1|  199|Drosophila melanogaster AT15479p pro...    29   5.0  
AE014297-232|AAN13279.1|  199|Drosophila melanogaster CG31542-PA...    29   5.0  
AE014298-2001|AAF48344.1|  334|Drosophila melanogaster CG11581-P...    29   6.6  
AE014297-4072|AAF56669.1|  463|Drosophila melanogaster CG6066-PA...    29   8.8  

>AE014298-1447|AAN09260.1| 1506|Drosophila melanogaster CG32681-PA
            protein.
          Length = 1506

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -1

Query: 358  QSSVDVSAPDSKESCR--VQRAEPGKEMCVRIVGKSSETTADAIEKLRAFISATRCECSP 185
            Q+S+  +AP   E+ R      +PG +M        S  +  +I  L +   + RC C+P
Sbjct: 1034 QASLRSTAPSHLETGRRYYTDTQPGSQMSGSRCSCRSLRSTTSIRALSSNTDSVRCPCAP 1093

Query: 184  APDTSDV 164
            AP  + V
Sbjct: 1094 APSVASV 1100


>BT009945-1|AAQ22414.1|  341|Drosophila melanogaster RH72958p
           protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 93  VAWPCFSRDALPHTDCSAGVPPAPTSLVSGAGLHSHRVAEMNARSFSMASAVVSLDL 263
           + WP F RD +  T    G     T+  + A   SHR+ E+ +R   +A+ + SL L
Sbjct: 111 IMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLELASRGGILAT-IASLAL 166


>AE014298-1546|AAF47994.1|  341|Drosophila melanogaster CG2076-PA
           protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 93  VAWPCFSRDALPHTDCSAGVPPAPTSLVSGAGLHSHRVAEMNARSFSMASAVVSLDL 263
           + WP F RD +  T    G     T+  + A   SHR+ E+ +R   +A+ + SL L
Sbjct: 111 IMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLELASRGGILAT-IASLAL 166


>AY113261-1|AAM29266.1|  199|Drosophila melanogaster AT15479p
           protein.
          Length = 199

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = -2

Query: 414 SRPAPPSXDTHTVRARLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSVNP 256
           SRP PPS     +      SR     PP   +R  C       +C CA  V P
Sbjct: 91  SRPPPPSVQADHITC----SRGPREQPPALETRCTCREKPAKTECHCAPPVAP 139


>AE014297-232|AAN13279.1|  199|Drosophila melanogaster CG31542-PA
           protein.
          Length = 199

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = -2

Query: 414 SRPAPPSXDTHTVRARLRSSRRWMSAPPTARSRAECNAPSRGRKCACASSVNP 256
           SRP PPS     +      SR     PP   +R  C       +C CA  V P
Sbjct: 91  SRPPPPSVQADHITC----SRGPREQPPALETRCTCREKPAKTECHCAPPVAP 139


>AE014298-2001|AAF48344.1|  334|Drosophila melanogaster CG11581-PA
           protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 420 GFSRPAPPSXDTHTVRARLRSSRRWMSAPPTA 325
           GF  PAPP       + + + S R + APP+A
Sbjct: 280 GFGGPAPPGYSDEPAKEQPKDSERTVVAPPSA 311


>AE014297-4072|AAF56669.1|  463|Drosophila melanogaster CG6066-PA
           protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
 Frame = -2

Query: 495 RASRSAHRAMEKVNSFVGSVHQRLRGFSRPAPPSXDTHTVRARLRSSRRWMSAPPTARSR 316
           R S S  R+  +  ++    H+R     R      + H  R   RSSRR        R R
Sbjct: 15  RRSDSRARSRSERRTYQKPQHRRSVSRERKRERDRELHRERTSNRSSRRSREKDAVPRRR 74

Query: 315 AECNAPSRGRKCA----CASSVNPVRLRLMPSRSYE 220
              ++PSR    +     +SS +P R R    +S E
Sbjct: 75  RTRSSPSRSSSSSSSDRSSSSRSPSRSRKSRPKSVE 110


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,675,984
Number of Sequences: 53049
Number of extensions: 711116
Number of successful extensions: 2725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2724
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)