Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11o03
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.0  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   7.0  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   7.0  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   7.0  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   7.0  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 108 FSRDALPHTDCSAGVPPAP 164
           F RD++ H D    +PP P
Sbjct: 306 FGRDSVDHVDFDEFLPPPP 324


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 336 ALTSTDDCFGDELSLCE 386
           ALT+  DC   EL+ CE
Sbjct: 167 ALTTLTDCLRSELAQCE 183


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 261 NPVRLRLMPSRSYEHSSLRRD 199
           NP+ L+LM    Y HS++  D
Sbjct: 83  NPLALQLMAQGLYNHSTVPVD 103


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 394 ARWRWSREASQPLVDGTYETVHLLHGAVSA 483
           + W W+       +DG Y+T   L  A+SA
Sbjct: 68  SNWNWNTLLRPNFLDGWYQT---LQSAISA 94


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 394 ARWRWSREASQPLVDGTYETVHLLHGAVSA 483
           + W W+       +DG Y+T   L  A+SA
Sbjct: 68  SNWNWNTLLRPNFLDGWYQT---LQSAISA 94


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 394 ARWRWSREASQPLVDGTYETVHLLHGAVSA 483
           + W W+       +DG Y+T   L  A+SA
Sbjct: 68  SNWNWNTLLRPNFLDGWYQT---LQSAISA 94


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 261 NPVRLRLMPSRSYEHSSL 208
           NP+ L+LM    Y HS++
Sbjct: 83  NPLALQLMAQGLYNHSTV 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,479
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)