Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n20
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   7.7  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    21   7.7  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   7.7  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   7.7  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   7.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 117 VLKRRSISNDFRVPFLLSS 173
           VLKR SI N     FL+ S
Sbjct: 301 VLKRESIHNSSNARFLMDS 319


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 49  LYKNKREYRKYRE 61


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 374 AYDDQKTRRKYKKTPK 327
           +Y ++ + RKY+KT K
Sbjct: 49  SYKNENSYRKYRKTSK 64


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 374 AYDDQKTRRKYKKTPK 327
           +Y ++ + RKY+KT K
Sbjct: 49  SYKNENSYRKYRKTSK 64


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 374 AYDDQKTRRKYKKTPK 327
           +Y ++ + RKY+KT K
Sbjct: 49  SYKNENSYRKYRKTSK 64


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 374 AYDDQKTRRKYKKTPK 327
           +Y ++ + RKY+KT K
Sbjct: 49  SYKNENSYRKYRKTSK 64


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 374 AYDDQKTRRKYKKTPK 327
           +Y ++ + RKY+KT K
Sbjct: 49  SYKNENSYRKYRKTSK 64


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 374 AYDDQKTRRKYKKTPK 327
           +Y ++ + RKY+KT K
Sbjct: 49  SYKNENSYRKYRKTSK 64


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 49  LYKNKREYRKYRE 61


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 49  LYKNKREYRKYRE 61


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 49  LYKNKREYRKYRE 61


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 49  LYKNKREYRKYRE 61


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 49  LYKNKREYRKYRE 61


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 49  LYKNKREYRKYRE 61


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 49  LYKNKREYRKYRE 61


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 49  LYKNKREYRKYRE 61


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 49  LYKNKREYRKYRE 61


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 282 LYKNKREYRKYRE 294


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 LSRNKREIHKYRK 476
           L +NKRE  KYR+
Sbjct: 282 LYKNKREYRKYRE 294


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 98  RRSLESDNLFVIRDLDEIEFLGKDN 24
           R +++SDN+F   +L ++  L + N
Sbjct: 45  RNAIQSDNVFANCELQKLRLLLQGN 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,022
Number of Sequences: 438
Number of extensions: 2232
Number of successful extensions: 22
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)