Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n18
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    30   0.31 
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    29   0.73 
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    28   1.7  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    27   2.9  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    26   6.8  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    25   9.0  

>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 219 SL*LSKIPKKIFDLSIYNRYIHILYSRNRFWNATYSNTGLLWS 91
           SL +   P K FD  +    IH  YSR R W      + L WS
Sbjct: 67  SLSIGNFPYKEFDPVLKFPGIHYTYSRERLWGTCVILSTLFWS 109


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 436 SIQRKHIVAYAVIELIELSLLTDYGISPEDHISFFQGHSERTFPTVL 576
           ++    ++A   IE++  +L +   + P DH++  Q  S  TFPTV+
Sbjct: 120 NMNSNEVIANRAIEILGGTLGSKKPVHPNDHVNMSQS-SNDTFPTVM 165


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 290 EDEEICLLSVYVLPYLDFLSEPLIPYNFRKYPKKSLIYQFITDIFIFYIAEIG 132
           ++EEI     Y+L  L+F      P NF +   K+  Y   T     Y+ EIG
Sbjct: 312 DEEEILQAERYILRVLEFNLAYPNPMNFLRRISKADFYDIQTRTVAKYLVEIG 364


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/86 (26%), Positives = 42/86 (48%)
 Frame = -3

Query: 633 KRHSKLQLSTSYWYKLLN*QHSWKSPFTVSLKKRNMVFRRNAIICQKRELD*LNYSISYN 454
           K+ + L L  S+  +L +   S + P +V  ++  + +R+N+I     E   L  S + N
Sbjct: 139 KKGNALSLKRSHSSQLAHTTSS-EIPGSVPWRRAGIKYRKNSIYIDIVERMNLLISSTGN 197

Query: 453 VLALNARPLSKQRTVLAKQPERLVGM 376
           VL  +   + K R +L+  PE   G+
Sbjct: 198 VLRSDVSGVVKMRAMLSGMPECQFGL 223


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 251 PYLDFLSEPLIPYNFRKYPKKSLIYQFITDIFIFYIAEI 135
           P+ D L EP++P    K+P         ++I  +YI EI
Sbjct: 83  PFTDNLPEPILPKFSGKFPLHPNNVNVNSEILEYYINEI 121


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/60 (21%), Positives = 31/60 (51%)
 Frame = -1

Query: 272 LLSVYVLPYLDFLSEPLIPYNFRKYPKKSLIYQFITDIFIFYIAEIGFGMQRTVIQVYFG 93
           L+++    YL F+   ++P+    +   +L+        ++ ++ +GF + + V+ VYFG
Sbjct: 176 LVALCYYSYLTFIGYQILPFLKNTH---ALLLPIPMFFIMWALSLLGFNVPKHVVDVYFG 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,841
Number of Sequences: 5004
Number of extensions: 50631
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)