Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11n15
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 28 1.7
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 28 1.7
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.3
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 3.0
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 27 4.0
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 26 7.0
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 7.0
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 9.3
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 9.3
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = -1
Query: 746 AYHGNRLENFYTI-LNFGLQQHLNKNTSL--GNGVYLSPELS 630
AYHG+R +N+Y + +FG ++ L + + G G+YL +++
Sbjct: 100 AYHGHRPKNYYRLNPHFGNEEDLKELSDALHGKGMYLMVDVA 141
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 547 SHKATQDK*PPIQLAPHPKP 606
SHKAT D PP + P P P
Sbjct: 313 SHKATSDAVPPAEAKPEPVP 332
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 518 N*SLRVHQPLRTRLHKISDLR-YNSPPIRSLHDCEVLSHL 634
N R +P++ +IS LR +N PPI+ H+ +L +
Sbjct: 27 NPMFRSLRPIQKSFSEISILRVFNKPPIKKFHNSNILKDI 66
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 767 KNHNVFYAYHGNRLENFYTILNFGLQQHLNKNTSLGNGVYLSPELSATIPHSH 609
K HN +++GNR ++I+N GL +L K+ + L+ + AT + H
Sbjct: 339 KRHNSSQSFYGNRSTTNFSIINSGL--YLKKDAAKN---LLAKQFDATYSYYH 386
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 514 W*LIPSGASTTSHKATQDK*PPIQLAPHPK 603
W +PSG +T S +A QDK +L H K
Sbjct: 523 WNNVPSGDNTLSTEALQDKKKSEELTAHSK 552
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 740 HGNRLENFYTILNFGLQQHLNKNTSLGNGV-YLSPELSATIPHSHGGFGWGASCIGGHLS 564
HG ++ ++ N L K +G V +L+ + IPH GG G G C+ HL+
Sbjct: 735 HGGQV--YFDGANMNAMVGLCKAGDIGADVCHLNLHKTFCIPHGGGGPGVGPICVKKHLA 792
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 602 FGWGASCIGGHL-SCVALCEVVDAPEGINYQKPVSNEGDGLY 480
F W HL SCV C+++ + NY+ P+ ++ LY
Sbjct: 1106 FDWDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPLDSKQGVLY 1147
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 169 LGYNSTIESWTWNWMPLIH*LDWIA 95
L Y S +E T+N P+IH L +IA
Sbjct: 6 LDYLSALEDLTFNSKPIIHTLTYIA 30
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 359 MRVVSRKPTDNGFSLSH 409
MR+ S P+ NGFS++H
Sbjct: 457 MRLSSEPPSSNGFSIAH 473
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 524 SLRVHQPLRTRLHKISDLRYNSPPIRSLHDCE 619
S+ +H RT H R+N I SL +CE
Sbjct: 165 SMDIHSRYRTEAHSDVTARFNERFILSLGNCE 196
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 82 IKYVRQSNPVNESKASNSKSMILLYCY-TLVLARAMSI 192
+KY++ + ESK SN IL Y + VLA A S+
Sbjct: 877 LKYIQHRDFTKESKDSNDTESILKNSYSSYVLALAYSV 914
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,469,481
Number of Sequences: 5004
Number of extensions: 76638
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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