Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n14
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   3.6  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   3.6  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    26   4.7  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   8.3  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    25   8.3  

>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 599 RYKIESMNELQALIKKYPIICTDAVXSAVQGKPSTPKLA 715
           RY+    +EL+  +KKYP+I            P  P LA
Sbjct: 27  RYQSSVSSELEESLKKYPVISNPQDFIVTLDGPDDPDLA 65


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 593 YQVELTLFYRRLTSDNSVERQNAFGL 516
           Y+ +L  F  R TS  +VER+ AFG+
Sbjct: 501 YETQLETFDGRATSALNVERERAFGV 526


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 461 TGVTISEFLTKIRHGVFLSARKHFGVQRCYPT*ADGKIMLVLP 589
           TG  I+ FL++     F S R   G + C+   A+G I+L+LP
Sbjct: 494 TGSIITSFLSR----AFGSIRYSGGRRFCFSALAEGAIVLILP 532


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 404  FMNIESRQAVWDSXTSLKGTGVTISEFLTKIRHGVFLSARKHFGVQ---RCYPT*ADGKI 574
            F+N  S++ VW S T      + I +  T ++     S +KHF +    +CY   A+  I
Sbjct: 979  FVNNVSKECVWVSLTPSVNGRIPILDLTTDVKE--LNSLQKHFFLGKAIKCYVVNAEDSI 1036

Query: 575  ML 580
             L
Sbjct: 1037 TL 1038


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 553 RITALNAKMLSG*QKYTMPYFRKELRNS 470
           R+ ALN K+L G Q+   PY    +++S
Sbjct: 280 RLNALNEKLLQGIQQSHQPYHYTNVKDS 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,119
Number of Sequences: 5004
Number of extensions: 49632
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)