Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n11
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    31   0.21 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    28   1.5  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    28   1.5  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    27   3.4  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   5.9  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   7.8  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 56  KQLREFRCGRRLQSHRAARLFAFQTVNFVAPYSQVLSANVIRSVF 190
           K + E RC R L+  R+ R    +T+N V P+S  L+A  +R +F
Sbjct: 643 KSMIELRCLRLLEKQRSLR----ETINSVIPHSDSLAAGNLRLMF 683


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 565  YVKDVSLLNVKNKWRDFAYWLPGFLQEYFKCYYGEEY 455
            Y K++S    + K  D A+W    L E  KC++ E Y
Sbjct: 1226 YKKNISEFE-REKVEDVAHWAQSSLSEMAKCFHAELY 1261


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 736 KNLLKNEFLSEYEDNNYHINWDDYYTHCNNPSW---TDYNIAATQIKCSVLEGAN 581
           +N+    + S   +N  + N +D  T   N +W   T YN++ T   C+  +GAN
Sbjct: 20  RNIFGATYTSLLLNNTINGNINDQSTAYYNLTWEGNTAYNVSLTLSTCTAFDGAN 74


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 409 IPPQTEHRPSLDTHSNTPRRNST*ST 486
           I P   H+PSL++ S+TP+ +S  ST
Sbjct: 540 ISPSILHKPSLESASSTPKISSCSST 565


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 362 MATLSALPGNTANEFAFRHRLNTVRASTHIR 454
           +ATLS LP  T+ +  F HR N  R+   ++
Sbjct: 527 VATLSCLPRYTSGKTQFYHRWNASRSEDALK 557


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -2

Query: 847 FGTLAIIY--FGNQFVLNIRDDGLPSGLIELLADEKPSIKNLLKNEFLSEYEDNNYHI 680
           +G L + Y   G+     IR+  L +GL+  +   +  ++ L+K +F++E  DN+  I
Sbjct: 122 YGRLGVDYAQVGDAPKKKIREMKLENGLLRNVEGIQAQLRRLIKCQFVAEEIDNDIAI 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,522
Number of Sequences: 5004
Number of extensions: 72691
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)