Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n11
         (854 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y18064-1|CAA77022.1|  890|Homo sapiens wolframin protein.              77   6e-14
BC030130-1|AAH30130.1|  890|Homo sapiens WFS1 protein protein.         77   6e-14
AF084481-1|AAC64943.1|  890|Homo sapiens transmembrane protein p...    77   6e-14
BC043273-1|AAH43273.1| 1098|Homo sapiens HYDIN protein protein.        32   2.3  

>Y18064-1|CAA77022.1|  890|Homo sapiens wolframin protein.
          Length = 890

 Score = 77.4 bits (182), Expect = 6e-14
 Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 8/199 (4%)
 Frame = -2

Query: 691  NYHINWDDYYTHCNNPSWTDYNIAATQIKCSVLEGANVNWEGYVKDVSLLNVKNKWRDFA 512
            N  + W  Y   C   +W + N+A TQI CS LEG  V W G  K V + ++ N      
Sbjct: 661  NSTLTWQQYGALCGPRAWKETNMARTQILCSHLEGHRVTWTGRFKYVRVTDIDNSAESAI 720

Query: 511  YWLPGFLQEYFKCYYGEEYSNVCRGSDGVQSVAECEFVSSVARQSGKSCHLDNLNEYTYE 332
              LP F+ ++ +C YGE Y   C  S G  S AE E +  +   +   CH+   + Y +E
Sbjct: 721  NMLPFFIGDWMRCLYGEAYP-AC--SPGNTSTAE-EELCRLKLLAKHPCHIKKFDRYKFE 776

Query: 331  VKLMMEASGGILKRHA--------EIVIHFGHYFTNFTRLLRSDDKIRFKGTLSNENRPY 176
            + + M  S G     +        +IV+     F +    LR    I F   L  E R  
Sbjct: 777  ITVGMPFSSGADGSRSREEDDVTKDIVLRASSEFKSVLLSLRQGSLIEFSTIL--EGR-- 832

Query: 175  NIGAKDLTIRGYEINCLEC 119
             +G+K        I+CL C
Sbjct: 833  -LGSKWPVFELKAISCLNC 850


>BC030130-1|AAH30130.1|  890|Homo sapiens WFS1 protein protein.
          Length = 890

 Score = 77.4 bits (182), Expect = 6e-14
 Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 8/199 (4%)
 Frame = -2

Query: 691  NYHINWDDYYTHCNNPSWTDYNIAATQIKCSVLEGANVNWEGYVKDVSLLNVKNKWRDFA 512
            N  + W  Y   C   +W + N+A TQI CS LEG  V W G  K V + ++ N      
Sbjct: 661  NSTLTWQQYGALCGPRAWKETNMARTQILCSHLEGHRVTWTGRFKYVRVTDIDNSAESAI 720

Query: 511  YWLPGFLQEYFKCYYGEEYSNVCRGSDGVQSVAECEFVSSVARQSGKSCHLDNLNEYTYE 332
              LP F+ ++ +C YGE Y   C  S G  S AE E +  +   +   CH+   + Y +E
Sbjct: 721  NMLPFFIGDWMRCLYGEAYP-AC--SPGNTSTAE-EELCRLKLLAKHPCHIKKFDRYKFE 776

Query: 331  VKLMMEASGGILKRHA--------EIVIHFGHYFTNFTRLLRSDDKIRFKGTLSNENRPY 176
            + + M  S G     +        +IV+     F +    LR    I F   L  E R  
Sbjct: 777  ITVGMPFSSGADGSRSREEDDVTKDIVLRASSEFKSVLLSLRQGSLIEFSTIL--EGR-- 832

Query: 175  NIGAKDLTIRGYEINCLEC 119
             +G+K        I+CL C
Sbjct: 833  -LGSKWPVFELKAISCLNC 850


>AF084481-1|AAC64943.1|  890|Homo sapiens transmembrane protein
            protein.
          Length = 890

 Score = 77.4 bits (182), Expect = 6e-14
 Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 8/199 (4%)
 Frame = -2

Query: 691  NYHINWDDYYTHCNNPSWTDYNIAATQIKCSVLEGANVNWEGYVKDVSLLNVKNKWRDFA 512
            N  + W  Y   C   +W + N+A TQI CS LEG  V W G  K V + ++ N      
Sbjct: 661  NSTLTWQQYGALCGPRAWKETNMARTQILCSHLEGHRVTWTGRFKYVRVTDIDNSAESAI 720

Query: 511  YWLPGFLQEYFKCYYGEEYSNVCRGSDGVQSVAECEFVSSVARQSGKSCHLDNLNEYTYE 332
              LP F+ ++ +C YGE Y   C  S G  S AE E +  +   +   CH+   + Y +E
Sbjct: 721  NMLPFFIGDWMRCLYGEAYP-AC--SPGNTSTAE-EELCRLKLLAKHPCHIKKFDRYKFE 776

Query: 331  VKLMMEASGGILKRHA--------EIVIHFGHYFTNFTRLLRSDDKIRFKGTLSNENRPY 176
            + + M  S G     +        +IV+     F +    LR    I F   L  E R  
Sbjct: 777  ITVGMPFSSGADGSRSREEDDVTKDIVLRASSEFKSVLLSLRQGSLIEFSTIL--EGR-- 832

Query: 175  NIGAKDLTIRGYEINCLEC 119
             +G+K        I+CL C
Sbjct: 833  -LGSKWPVFELKAISCLNC 850


>BC043273-1|AAH43273.1| 1098|Homo sapiens HYDIN protein protein.
          Length = 1098

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 145 GYEINC-LECKEARGSVTLKTSSASKFSELFKTIVNDCV 32
           GY +N  ++CK+  GS+TL T + +     ++  +N+CV
Sbjct: 363 GYTMNVEIKCKDRTGSITLLTPNQTNIINFYEVELNECV 401


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,533,371
Number of Sequences: 237096
Number of extensions: 2470728
Number of successful extensions: 5235
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5235
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)