Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n11
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.67 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 318 WKPVAVF*SATRKSSYTLVIILRILHVYCDRTTRYVLK 205
           W+P + F +A   +  T+ I    L +Y D+T  Y++K
Sbjct: 119 WRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVK 156


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 318 WKPVAVF*SATRKSSYTLVIILRILHVYCDRTTRYVLK 205
           W+P   F +A + + + + I    L +Y D+T  Y+ K
Sbjct: 88  WRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSK 125


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 820 GNQFVLNIRDDGLPSGL 770
           G  FV  +R+DG+PS L
Sbjct: 75  GKTFVTILRNDGVPSSL 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,507
Number of Sequences: 438
Number of extensions: 5133
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)