Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n08
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.60 
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    28   1.8  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   4.3  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   7.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   9.8  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 268 HFVPLTFHSSPCHGALSRRLVTRLVGPN*PKPPNFVGLHSRILK 399
           H    T +S   HG  SR  +T    P+   PPNF+  HS + +
Sbjct: 219 HVKDETLYSDLEHGKQSRVSLTSKSTPDNSLPPNFINNHSNVFR 262


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 649  YTS*GQKVGPQCVA---PLHMYAIKYYTLIHYVYYVL 750
            YT  G  V  +C+A    L   A+KY  LI Y++Y+L
Sbjct: 952  YTQEGNYVLVRCIAFNLMLQAGALKYTPLIKYIFYIL 988


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 241 GQQQLYAQISFVVTRAPTTSPRDSPA*VPARCVA*SIDL--SVPLVNAC 101
           G  Q++ ++SF +     T+P DS   V  RC + SI L    PLV  C
Sbjct: 602 GLSQIFNRLSFFLENTNQTAPDDS---VLVRCSSKSIGLLFFFPLVKVC 647


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = -3

Query: 385 YVNRQNSVVLANSGPRVASQVGATVRHGTGTSGMLEARNASPDQRRTRGQQQLYAQISFV 206
           Y+N+ ++ + A       S+ G++  HG G    L++R     + R         Q  F 
Sbjct: 142 YMNQNDTSIAAQLSDGYTSEAGSSATHGQGLLDSLKSRPRRFSRSRDNRGPLFTGQQVFE 201

Query: 205 VTRAP 191
           V + P
Sbjct: 202 VEKYP 206


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 341 TSRVTSRRDSAPWHGDEWNVRGTKCEPRPASHAG-PATALCSNKFR--RHTRSDHISKRL 171
           TSRVTS+++ A     + +VR       P  H   P+    SNK R  ++T    I K L
Sbjct: 89  TSRVTSKKNEAGTESGDASVRRIYVTSIPEEHRHLPSQWFPSNKIRTTKYTPVSFIPKNL 148


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +2

Query: 320 ADL*RDSWARISQNHRILSVYIAGF*SVYKEIPSFFHK*NQTGVDFY 460
           ADL    W  +        V+I GF       P FF   N+  ++ Y
Sbjct: 2   ADLYTKDWTDVKDKPVARVVFIHGFGEHVNAYPEFFEALNERNIEVY 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,959
Number of Sequences: 5004
Number of extensions: 66745
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)