Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n08
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501...    30   1.9  
02_02_0248 - 8267332-8268276,8268338-8269288                           30   2.6  
02_02_0149 - 7182562-7182891,7182989-7183575,7185334-7185433,718...    29   4.5  
04_04_0371 + 24771687-24772081,24772139-24772535,24773394-247734...    28   7.8  

>03_05_0923 +
           28848925-28849272,28849636-28849869,28849965-28850131,
           28850433-28850651,28850743-28850929,28851012-28851063,
           28851158-28851387,28851619-28851717,28851835-28852565,
           28853004-28853519,28854140-28854398
          Length = 1013

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 162 RYLRAALHKA---LICRCHS*MRALVGIFILSIN 70
           R+ RAALHKA   L+C C    R L   F +S+N
Sbjct: 60  RFRRAALHKAEEALVCMCEERARMLQDQFAVSVN 93


>02_02_0248 - 8267332-8268276,8268338-8269288
          Length = 631

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 122 RQINALCNAA--RRYLRRRVSWRCGRSACDDETYLSIELLLAPRATLVW 262
           R ++ L NAA  RR+  RR  W   R  C  E   S+  L    A LVW
Sbjct: 400 RWVDDLTNAAAYRRFNDRRGQWTLRRERCYQELGWSVTELPFDEAVLVW 448


>02_02_0149 -
           7182562-7182891,7182989-7183575,7185334-7185433,
           7185547-7185563,7185928-7186369,7186501-7186629
          Length = 534

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 107 IHEW-HRQINALCNAARRYLRRRVSWRCGRSACDD 208
           +HEW H    +   A  R  RRR+ WR  RS   D
Sbjct: 88  LHEWLHGNRRSQLEAGERQRRRRLRWRARRSIAVD 122


>04_04_0371 +
           24771687-24772081,24772139-24772535,24773394-24773435,
           24773571-24774305,24775357-24775480,24775613-24776580,
           24776917-24776925
          Length = 889

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 279 SNIPLVPVPWRTVAPTCDATRGPELAKTTE 368
           S +P+V +P +   P+CD    P + KT E
Sbjct: 619 SLVPVVSLPEKLTFPSCDGLPTPSVGKTVE 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,306,539
Number of Sequences: 37544
Number of extensions: 442734
Number of successful extensions: 999
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)