Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11n08
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70266-6|CAD57691.1| 795|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z70266-5|CAA94208.1| 798|Caenorhabditis elegans Hypothetical pr... 30 1.7
AL023827-4|CAD57709.1| 795|Caenorhabditis elegans Hypothetical ... 30 1.7
AL023827-3|CAA19446.1| 798|Caenorhabditis elegans Hypothetical ... 30 1.7
U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory ... 29 5.3
L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degeneri... 29 5.3
U80027-1|AAC48122.2| 338|Caenorhabditis elegans Serpentine rece... 28 7.0
U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin fam... 28 7.0
AF099922-4|AAK21409.1| 497|Caenorhabditis elegans Hypothetical ... 28 7.0
AC006633-1|AAK68374.1| 113|Caenorhabditis elegans Hypothetical ... 28 9.3
>Z70266-6|CAD57691.1| 795|Caenorhabditis elegans Hypothetical
protein C40C9.5b protein.
Length = 795
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 264 LAFRASNIPLVPVPWRTVAPTCDATRGPELAKTTEFCRFT*QDFEVFTKKFPH 422
+A A+ +P R V+P C T PEL++T F + Q F+ + PH
Sbjct: 65 MAISAAKWTHMPKDARKVSPVCIQTDMPELSETKAFKHTSAQRFDFNHRLLPH 117
>Z70266-5|CAA94208.1| 798|Caenorhabditis elegans Hypothetical
protein C40C9.5a protein.
Length = 798
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 264 LAFRASNIPLVPVPWRTVAPTCDATRGPELAKTTEFCRFT*QDFEVFTKKFPH 422
+A A+ +P R V+P C T PEL++T F + Q F+ + PH
Sbjct: 65 MAISAAKWTHMPKDARKVSPVCIQTDMPELSETKAFKHTSAQRFDFNHRLLPH 117
>AL023827-4|CAD57709.1| 795|Caenorhabditis elegans Hypothetical
protein C40C9.5b protein.
Length = 795
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 264 LAFRASNIPLVPVPWRTVAPTCDATRGPELAKTTEFCRFT*QDFEVFTKKFPH 422
+A A+ +P R V+P C T PEL++T F + Q F+ + PH
Sbjct: 65 MAISAAKWTHMPKDARKVSPVCIQTDMPELSETKAFKHTSAQRFDFNHRLLPH 117
>AL023827-3|CAA19446.1| 798|Caenorhabditis elegans Hypothetical
protein C40C9.5a protein.
Length = 798
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 264 LAFRASNIPLVPVPWRTVAPTCDATRGPELAKTTEFCRFT*QDFEVFTKKFPH 422
+A A+ +P R V+P C T PEL++T F + Q F+ + PH
Sbjct: 65 MAISAAKWTHMPKDARKVSPVCIQTDMPELSETKAFKHTSAQRFDFNHRLLPH 117
>U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory
abnormality protein10 protein.
Length = 724
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 227 LCSNKFRRHTRSDHISKRLACVGTCALRCIKH*SVGATRECVHLWEY 87
LCS K ++ T+ + K + L CIKH ++LWEY
Sbjct: 304 LCSKKAKKGTKRSELKKEPCICESKGLFCIKHEHAAMV---LNLWEY 347
>L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degenerin
protein.
Length = 724
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 227 LCSNKFRRHTRSDHISKRLACVGTCALRCIKH*SVGATRECVHLWEY 87
LCS K ++ T+ + K + L CIKH ++LWEY
Sbjct: 304 LCSKKAKKGTKRSELKKEPCICESKGLFCIKHEHAAMV---LNLWEY 347
>U80027-1|AAC48122.2| 338|Caenorhabditis elegans Serpentine
receptor, class j protein11 protein.
Length = 338
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 393 FEVFTKKFPHFFTNEIKQVSISIFC*CISL 482
F ++ P F T ++ Q+++SI C CISL
Sbjct: 72 FVIYLADGPFFGTGKLGQLAVSIRCGCISL 101
>U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin family
protein 18 protein.
Length = 473
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 393 FEVFTKKFPHFFTNEIKQVSISIFC*CIS-LVVVTEYTINS*SLSKY 530
F+V T + F +K SISI+ C+S +V V YT++ S+Y
Sbjct: 83 FDVATSQESEAFHVNLKTYSISIYLLCVSFMVCVLSYTLSLRISSEY 129
>AF099922-4|AAK21409.1| 497|Caenorhabditis elegans Hypothetical
protein F56F11.3 protein.
Length = 497
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -2
Query: 305 WHGDEWN-VRGTKCEPRPASHAGPATALCSNKFRRHTRSDHIS 180
W G +W R + H G CS R +RSDH+S
Sbjct: 448 WDGCDWRFARSDELTRHYRKHTGDRPFKCSQCSRAFSRSDHLS 490
>AC006633-1|AAK68374.1| 113|Caenorhabditis elegans Hypothetical
protein F35B3.3 protein.
Length = 113
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 73 YTKY-EYSHKCTHSRVAPTDQCFMQRSAQVPTQASLLE 183
YT Y E HKC P + C +++ VP LLE
Sbjct: 7 YTGYLEKKHKCNWKCYLPNNNCKLRQIKPVPNLTRLLE 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,436,574
Number of Sequences: 27780
Number of extensions: 395838
Number of successful extensions: 856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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