Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n07
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    71   2e-12
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    64   1e-10
03_02_0673 - 10328994-10329281                                         36   0.054

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
 Frame = -3

Query: 648 KVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQHG 472
           KV ++++YES C  S  F++  L       L D +DL L+P+G A  + +G    + +HG
Sbjct: 31  KVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLSLVPYGNAR-VKDGKISCQVEHG 89

Query: 471 PPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPVRECV 292
             ECF N ++ C ++         +  Y   ++      R    C  K N+   PV +C 
Sbjct: 90  SEECFLNTVEACAIDAWPDLRVHFRFIYCVEDLVVNHKQREWESCFGKLNLDPKPVTDCY 149

Query: 291 YLGPGTLLQLDSERLTKLVNP--KFIPTIVLDG 199
               G  L L   R T  + P  K++P +V+DG
Sbjct: 150 KGERGHQLSLKYGRQTDALQPPHKYVPWVVVDG 182


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 7/154 (4%)
 Frame = -3

Query: 639 LSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQHGPPE 463
           +SV+YE+ C     F++  L       L   +DL+L+PFG      +G     CQHG  E
Sbjct: 1   MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFGNGRVSPDGS--ITCQHGEEE 58

Query: 462 CFGNLIQDCTL----NEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPVREC 295
           C  N I+ C +    +  + +  ++ +E+LA   +  A       C  ++ +   PV +C
Sbjct: 59  CQLNAIEACVIRLWPDAEQHFPFINCIEHLALTQKWNAWQ----SCFQETGLASQPVMDC 114

Query: 294 VYLGPGTLLQLDSERLTKLVNP--KFIPTIVLDG 199
              G GT LQL     T  + P  +F+P + ++G
Sbjct: 115 YNSGYGTQLQLQYAAETNALQPPHQFVPWVTVNG 148


>03_02_0673 - 10328994-10329281
          Length = 95

 Score = 35.5 bits (78), Expect = 0.054
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 648 KVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQ 478
           KV L+++YE+ C     FI+  L       + D +DL+L+P+G A  +    +   CQ
Sbjct: 38  KVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNAHVV-GANNTISCQ 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,302,414
Number of Sequences: 37544
Number of extensions: 495705
Number of successful extensions: 1109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)