Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11n07
(848 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81534-4|CAB04345.1| 277|Caenorhabditis elegans Hypothetical pr... 76 4e-14
L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical pr... 73 2e-13
L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical pr... 73 2e-13
AF077534-7|AAK71376.1| 319|Caenorhabditis elegans Prion-like-(q... 59 3e-09
Z32683-12|CAA83624.2| 186|Caenorhabditis elegans Hypothetical p... 59 5e-09
Z37093-1|CAA85467.1| 264|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z37093-2|CAA85464.1| 218|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AC024753-11|AAF60461.1| 369|Caenorhabditis elegans Hypothetical... 32 0.59
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p... 31 0.78
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 31 0.78
AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical ... 29 4.2
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 29 4.2
U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth... 29 5.5
AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopente... 29 5.5
AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical ... 29 5.5
Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical pr... 28 7.3
X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein. 28 7.3
X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein. 28 7.3
AL034488-13|CAA22460.2| 345|Caenorhabditis elegans Hypothetical... 28 7.3
Z93380-6|CAB07602.2| 339|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z81587-13|CAB04710.2| 339|Caenorhabditis elegans Hypothetical p... 28 9.6
Z66520-7|CAA91384.1| 286|Caenorhabditis elegans Hypothetical pr... 28 9.6
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ... 28 9.6
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport... 28 9.6
>Z81534-4|CAB04345.1| 277|Caenorhabditis elegans Hypothetical
protein F37H8.5 protein.
Length = 277
Score = 75.8 bits (178), Expect = 4e-14
Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 9/180 (5%)
Frame = -3
Query: 651 RKVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQH 475
+K+ ++V E+ C D ++F+ +QL+P + K +Y++++L+PFG A + +G +CQH
Sbjct: 74 QKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLEDG--TIKCQH 131
Query: 474 GPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDI-QCIVKSNVPHDPVR- 301
G EC N + C ++ M+ S + + + ++ + QC K + D R
Sbjct: 132 GEEECSINKFEGCFIDSMQDQSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRL 191
Query: 300 --ECVYLGPGTLLQLDSERLTKLVNP---KFIPTIVLDGVFDQATQNKAF-NDLMGTICD 139
C+ G LQ + T V P KF+P ++++GV T + F N L +C+
Sbjct: 192 TQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGV--SLTSFQGFQNQLPTLLCE 249
>L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical
protein C02D5.2b protein.
Length = 263
Score = 73.3 bits (172), Expect = 2e-13
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 9/192 (4%)
Frame = -3
Query: 645 VQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFECQ-- 478
V+L V+ E+ C D+ F +QL L + I+L +IPFGKA G D FECQ
Sbjct: 79 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGND-FECQCQ 137
Query: 477 HGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVP--HDPV 304
HGP EC N + +C ++ + H+ M+ S ++C+ + N P ++ +
Sbjct: 138 HGPTECQINQLMNCVIDR---FGFPHRYLPGVLCMQGKYSLDEAMKCVTE-NYPSEYERM 193
Query: 303 RECVYLGPGTLLQLDSERLTKLVNP--KFIPTIVLDGVFDQATQNKAFNDLMGTICDRLR 130
REC G L S + T + P FIP IV++G + + A DL +C+ ++
Sbjct: 194 RECASGTRGRRLLALSGQKTASLTPAIDFIPWIVING----SRNSDALYDLTQNVCEAMQ 249
Query: 129 NV-KPCKEYFRN 97
+ CK+Y R+
Sbjct: 250 PMPSACKDYLRS 261
>L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical
protein C02D5.2a protein.
Length = 323
Score = 73.3 bits (172), Expect = 2e-13
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 9/192 (4%)
Frame = -3
Query: 645 VQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFECQ-- 478
V+L V+ E+ C D+ F +QL L + I+L +IPFGKA G D FECQ
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGND-FECQCQ 197
Query: 477 HGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVP--HDPV 304
HGP EC N + +C ++ + H+ M+ S ++C+ + N P ++ +
Sbjct: 198 HGPTECQINQLMNCVIDR---FGFPHRYLPGVLCMQGKYSLDEAMKCVTE-NYPSEYERM 253
Query: 303 RECVYLGPGTLLQLDSERLTKLVNP--KFIPTIVLDGVFDQATQNKAFNDLMGTICDRLR 130
REC G L S + T + P FIP IV++G + + A DL +C+ ++
Sbjct: 254 RECASGTRGRRLLALSGQKTASLTPAIDFIPWIVING----SRNSDALYDLTQNVCEAMQ 309
Query: 129 NV-KPCKEYFRN 97
+ CK+Y R+
Sbjct: 310 PMPSACKDYLRS 321
>AF077534-7|AAK71376.1| 319|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 48
protein.
Length = 319
Score = 59.3 bits (137), Expect = 3e-09
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = -3
Query: 672 CIGVDLKRK-VQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSINNGG 496
C G+ +R+ +++++ YE+ C + FI QL ++ + + L+L+P+G + + +G
Sbjct: 131 CDGLRHRRQPIKITLIYEALCPYCQKFIANQLGSVFNQFQGQLILELVPWGNSRIMRDG- 189
Query: 495 DGFECQHGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVP 316
F C HG EC N +Q C ++ +K + + ++ C
Sbjct: 190 -SFSCNHGQKECDANRLQSCVIDILKVKGALPFIVCFERNIQHYGVEHAMQTCSAFIRSQ 248
Query: 315 HDPVRECVYLGP-GTLLQLDSERLTKLVNP 229
+ +R+C Y GP G LQ ++ + T P
Sbjct: 249 YRQIRQC-YDGPRGVQLQREAAQKTMSTRP 277
>Z32683-12|CAA83624.2| 186|Caenorhabditis elegans Hypothetical
protein R07E5.4 protein.
Length = 186
Score = 58.8 bits (136), Expect = 5e-09
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 4/170 (2%)
Frame = -3
Query: 690 VILAVFCIGVDLK-RKVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKAS 514
V+L F V L+ ++V +++F ES C + EQ+ P ++LQ++PFGK
Sbjct: 3 VLLVAFLFPVLLQAQQVNVTIFTESQCPYCTKLLREQIWPFYVNRPGIMNLQIVPFGKGD 62
Query: 513 SINNGGDGFE--CQHGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQ 340
+ F C HG EC N +Q+C + SY + + C G +
Sbjct: 63 CTYDYNRNFHCTCMHGATECDLNRLQNCAI----SYFPRRHLGLVTCLQGLTTLREGFSK 118
Query: 339 CIVK-SNVPHDPVRECVYLGPGTLLQLDSERLTKLVNPKFIPTIVLDGVF 193
C+ + S + EC G LL S T + PT+ ++GVF
Sbjct: 119 CLSRLSPNTQRKLIECATTQTGELLNYYSMVNTHRAGVRIWPTMYVNGVF 168
>Z37093-1|CAA85467.1| 264|Caenorhabditis elegans Hypothetical
protein ZK669.2 protein.
Length = 264
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = -3
Query: 645 VQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFEC--Q 478
+ + F ES C D+ + + P L+ I++ PFG AS + G C Q
Sbjct: 74 INIEFFGESLCPDTTRYFRNHIMPVWTSLQASSTINITYHPFGLASCRRSAETGIRCNCQ 133
Query: 477 HGPPECFGNLIQDCTLNEMK 418
HGP EC N++Q C ++ ++
Sbjct: 134 HGPAECQLNMLQACVISTLQ 153
>Z37093-2|CAA85464.1| 218|Caenorhabditis elegans Hypothetical
protein ZK669.3 protein.
Length = 218
Score = 43.2 bits (97), Expect = 2e-04
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 9/185 (4%)
Frame = -3
Query: 645 VQLSVFYESACSDSKHFILEQLHPTIHKLEDY--IDLQLIPFG-KASSINN-GGDGF--E 484
V + F E CSD+ +++ P L I+ P+G K + +++ D +
Sbjct: 31 VNIVAFGEGRCSDTSYWMKWHWLPMWRMLGSTGRINFDYHPYGIKTTCVDSESADDVVCD 90
Query: 483 CQHGPPECFGNLIQDCTLNEMKSYSDVHKVEYLAC-EMETMASTRGDIQCIVKSNVPHDP 307
C HG EC N +Q C + + ++ D +E + C + + S ++ + +
Sbjct: 91 CHHGNRECLLNQLQACVIEALPNFEDY--MEVVTCIQGKQNISMAAEVCFEGPTKLDRTK 148
Query: 306 VRECVYLGPGTLLQLDSERLTKLVNPK--FIPTIVLDGVFDQATQNKAFNDLMGTICDRL 133
+ EC G L D E + + P+ + P I+++G +A DL +CDR
Sbjct: 149 MMECAESRHGRKLFSDQENIVAQMAPEMDWAPWILING----TRYKEAEEDLWQFLCDRF 204
Query: 132 RNVKP 118
+ +P
Sbjct: 205 IDPRP 209
>AC024753-11|AAF60461.1| 369|Caenorhabditis elegans Hypothetical
protein Y23H5B.1 protein.
Length = 369
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 654 KRKVQLSVFYESACSDSKHFILEQLHPT---IHKLEDYIDLQLIPFGKASSINNG 499
K + +LS+ Y+ + + LEQLHPT I KL ++++ +P + + N G
Sbjct: 52 KNRERLSLLYKCQEATDCYMKLEQLHPTSKEIKKLVNFVERNQVPICQILNFNTG 106
>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 578 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 676
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
protein C18D4.2a protein.
Length = 1817
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 578 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 676
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 578 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 676
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
protein C18D4.2a protein.
Length = 1817
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 578 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 676
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical
protein Y18D10A.2 protein.
Length = 220
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = -3
Query: 639 LSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQL-IPFGKASSINNGGDGF---ECQHG 472
+ VF S C D+ FI QL P + + L + F + + DG C HG
Sbjct: 39 VEVFGISRCPDTSKFIHNQLVPFYQNYKGNLSDGLKLDFHAVPTGGHQVDGKYVNRCLHG 98
Query: 471 PPECFGNLIQDCTLNEMK 418
EC N +Q C+ +K
Sbjct: 99 ALECALNKLQMCSKKHIK 116
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -3
Query: 690 VILAVFCIGVDLKRKVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASS 511
+I A IG+ L+ + L+++ + SK L L + K+E+ ID L ASS
Sbjct: 1169 IIAASSMIGIRLQILLALTIWLAETGAASKRKNLRSLFMNLTKMENQIDPFLSILNLASS 1228
Query: 510 IN 505
IN
Sbjct: 1229 IN 1230
>U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth
rate protein 1 protein.
Length = 430
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 523 EGIEYKQWWGRIRMSTWTARMLREPNSRLHIERNEVIFRRS 401
EGI ++ W ++ + +L PN+R ++R IFR +
Sbjct: 157 EGISNQELWDELKKIDEKSALLLHPNNRYRVQRALQIFRET 197
>AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopentenyl
transferase protein.
Length = 430
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 523 EGIEYKQWWGRIRMSTWTARMLREPNSRLHIERNEVIFRRS 401
EGI ++ W ++ + +L PN+R ++R IFR +
Sbjct: 157 EGISNQELWDELKKIDEKSALLLHPNNRYRVQRALQIFRET 197
>AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical
protein Y75B8A.3 protein.
Length = 827
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 655 QVNSYTENGQNHVNIYKKLHI 717
Q+ SY +NG HV +Y+ H+
Sbjct: 643 QIQSYMQNGARHVRVYQFTHV 663
>Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical
protein C46F11.1b protein.
Length = 700
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 588 PI*SVCCQSKRFHKKPKVGPFFSSQLLYRKRPKSRKYLQKTSYFLNVTTFVIRSKFNL 761
P+ S+C + K F ++PKV FS + + R++ K+ + +K SY T+F F L
Sbjct: 106 PLESLCIRPKEFFEEPKV---FSFRDMGREQQKA-EVNEKCSYLFRGTSFDHDDHFEL 159
>Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical
protein C46F11.1a protein.
Length = 705
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 588 PI*SVCCQSKRFHKKPKVGPFFSSQLLYRKRPKSRKYLQKTSYFLNVTTFVIRSKFNL 761
P+ S+C + K F ++PKV FS + + R++ K+ + +K SY T+F F L
Sbjct: 111 PLESLCIRPKEFFEEPKV---FSFRDMGREQQKA-EVNEKCSYLFRGTSFDHDDHFEL 164
>Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical
protein W05H5.4 protein.
Length = 358
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 633 VFYESACSDSKHFILEQLHPTIHKL-EDYIDLQLIPFGKASSINNGGDGF 487
VFY+ K+ +L Q+H +H E Y + LIP SI DGF
Sbjct: 47 VFYKCKHFSKKYVVLLQIHLFLHFFGELYWTILLIPVIVIPSIGVSADGF 96
>X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein.
Length = 700
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 588 PI*SVCCQSKRFHKKPKVGPFFSSQLLYRKRPKSRKYLQKTSYFLNVTTFVIRSKFNL 761
P+ S+C + K F ++PKV FS + + R++ K+ + +K SY T+F F L
Sbjct: 106 PLESLCIRPKEFFEEPKV---FSFRDMGREQQKA-EVNEKCSYLFRGTSFDHDDHFEL 159
>X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein.
Length = 705
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 588 PI*SVCCQSKRFHKKPKVGPFFSSQLLYRKRPKSRKYLQKTSYFLNVTTFVIRSKFNL 761
P+ S+C + K F ++PKV FS + + R++ K+ + +K SY T+F F L
Sbjct: 111 PLESLCIRPKEFFEEPKV---FSFRDMGREQQKA-EVNEKCSYLFRGTSFDHDDHFEL 164
>AL034488-13|CAA22460.2| 345|Caenorhabditis elegans Hypothetical
protein Y54G11A.12 protein.
Length = 345
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 717 FLNVTTFVIRSKFNLINFYLYMCSRV*YSTVCVRCIHEL 833
F + T+ VI+ +L N ++Y C + VC C+H L
Sbjct: 186 FFDDTSAVIQRDASLFNPHMYTCCFILSVLVCFYCLHVL 224
>Z93380-6|CAB07602.2| 339|Caenorhabditis elegans Hypothetical
protein F28C12.7 protein.
Length = 339
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 693 KYLQKTSYFLNVTTFVIRSKFNLINFYL--YMCSRV*YSTVCVR 818
K+ YF+ ++ VI+ L++FY+ Y S Y +VC++
Sbjct: 142 KFYHTHQYFIAISLLVIQLLLTLVSFYIAFYGVSLAGYVSVCIQ 185
>Z81587-13|CAB04710.2| 339|Caenorhabditis elegans Hypothetical
protein F28C12.7 protein.
Length = 339
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 693 KYLQKTSYFLNVTTFVIRSKFNLINFYL--YMCSRV*YSTVCVR 818
K+ YF+ ++ VI+ L++FY+ Y S Y +VC++
Sbjct: 142 KFYHTHQYFIAISLLVIQLLLTLVSFYIAFYGVSLAGYVSVCIQ 185
>Z66520-7|CAA91384.1| 286|Caenorhabditis elegans Hypothetical
protein F49E12.10 protein.
Length = 286
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 56 GRFILRCTIYNHYLFLKYSLQGLTF 130
G + RC + +HY+F Y++ TF
Sbjct: 175 GAVLFRCHVVSHYIFTSYAILTTTF 199
>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
related protein 2 protein.
Length = 1272
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 329 NRMYHMTQFGNAYTWVPEHCCNWIPNA*RNSLTQSSYPLSFWTGSSI 189
+R Y+ + G T + ++C I N SSY L+FW GS++
Sbjct: 281 DRFYNALEVGRQ-TGIVKYCYMGIGVGFSNLCMYSSYALAFWYGSTL 326
>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
PGP-2 protein.
Length = 1272
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 329 NRMYHMTQFGNAYTWVPEHCCNWIPNA*RNSLTQSSYPLSFWTGSSI 189
+R Y+ + G T + ++C I N SSY L+FW GS++
Sbjct: 281 DRFYNALEVGRQ-TGIVKYCYMGIGVGFSNLCMYSSYALAFWYGSTL 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,067,247
Number of Sequences: 27780
Number of extensions: 479270
Number of successful extensions: 1244
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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