Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11n03
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 34 0.028
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 32 0.11
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 32 0.11
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 31 0.19
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 31 0.26
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 30 0.34
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 30 0.34
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 29 0.59
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 29 0.79
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 29 1.0
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.4
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 28 1.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 1.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 1.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 28 1.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 28 1.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 28 1.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 28 1.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 1.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 28 1.8
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 28 1.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 1.8
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 28 1.8
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 28 1.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 28 1.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 28 1.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 1.8
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 2.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.2
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 4.2
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 4.2
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 4.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.2
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 26 7.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 7.3
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 26 7.3
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha... 25 9.7
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 9.7
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 25 9.7
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 9.7
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 9.7
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 25 9.7
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 33.9 bits (74), Expect = 0.028
Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Frame = -1
Query: 770 LTSFLNSIFDKEHYR-IALAENEAKNKLERRELTKQIRQLRNHIKTVLYDN--EVTIDSL 600
++SF N + K++ + + N +E E K + +L + E+T + L
Sbjct: 2 ISSFSNGFWSKDYATGVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITKECL 61
Query: 599 KSQVEDSVLDSECSSRYVDNW--QVART-EQHLEVINEAENSCIETIEQYKLKIEHEQRI 429
K + ++ D S++ + ++A +QH+ + + E I K+ I+H Q++
Sbjct: 62 KGKKPENTEDGATSNKAFEGLRSEIANQGKQHIRIAKDLETLIIAPFS--KMSIDHSQKL 119
Query: 428 HSEVELLTN 402
+ ++LTN
Sbjct: 120 QTSQQVLTN 128
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/64 (23%), Positives = 35/64 (54%)
Frame = -1
Query: 527 RTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLEKIEKWMSKYD 348
R EQ++E + + + ++Q+++ IEH+ + + ++ T+ E LE + W+ K
Sbjct: 109 RLEQYMESSSLDASILPKNLQQWRVYIEHKAPCWAILAVVDLATVLEILESLSSWLEKDA 168
Query: 347 RDME 336
D++
Sbjct: 169 IDLQ 172
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/64 (23%), Positives = 35/64 (54%)
Frame = -1
Query: 527 RTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLEKIEKWMSKYD 348
R EQ++E + + + ++Q+++ IEH+ + + ++ T+ E LE + W+ K
Sbjct: 109 RLEQYMESSSLDASILPKNLQQWRVYIEHKAPCWAILAVVDLATVLEILESLSSWLEKDA 168
Query: 347 RDME 336
D++
Sbjct: 169 IDLQ 172
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 31.1 bits (67), Expect = 0.19
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = -1
Query: 767 TSFLNSIFDKEHYRIALAENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQV 588
T F F+ E YR + E NK+ + + R++ + ++L ++ + K ++
Sbjct: 20 TVFGEKHFEAEEYRDSFLSQENMNKINHTTIERLFREMTENDPSLLSSSKTLAELSKGEL 79
Query: 587 EDSVLDSECSSRYVDNWQVARTEQHLE--VINEAENSCI 477
+ D + ++ N TE E I + NSC+
Sbjct: 80 AKAREDLKSVLSFLKNNLPVDTESSSEAFTIEKDNNSCV 118
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 30.7 bits (66), Expect = 0.26
Identities = 32/189 (16%), Positives = 87/189 (46%), Gaps = 11/189 (5%)
Frame = -1
Query: 785 KNXKTLTSFLNSIFDKEHYRIALAENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTID 606
K ++L LNS+ + H R+A+ E +E EL Q +L++ + E +
Sbjct: 236 KGMESLEIMLNSMKSENHQRMAMLEENHARVMETAELQHQ-AELQDFASNI----EQKAN 290
Query: 605 SLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEVINEAENSCIETIEQ------YKLKIE 444
SL + ++ + +E + + E + + E ++S ++ +++ +++ +
Sbjct: 291 SLIMEYKNELQSAEEHFSHKIKELTSENELKISRLQEEKDSLLKKVQEGASLAMQRVQNK 350
Query: 443 HE---QRIHSEVELL--TNITINETLEKIEKWMSKYDRDMEGIDIDMQRKKNHYQDMRDK 279
H+ +R+ S ++ L N ++ + +E++++ ++ E + + ++ + Q +
Sbjct: 351 HDLEKKRLQSAIQPLQEENNSLKQQIEQLQRELASETVVKENLKSSLDQQSANVQKLEST 410
Query: 278 RINFENTIE 252
E+TI+
Sbjct: 411 NRALESTIK 419
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 30.3 bits (65), Expect = 0.34
Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 2/165 (1%)
Frame = -1
Query: 737 EHYRIALAENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDSECS 558
E Y +L E + N E R + + V DN+++ +K V+D + S
Sbjct: 1023 EDYAKSLTEVDY-NFFENRGIDYKSNPTEQSTVLVSSDNDISSQEIKI-VDDYYISSNEH 1080
Query: 557 SRYVDNWQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLE 378
S + + +E+ VI++ +S I+ ++ + + + +EL+ + ++++
Sbjct: 1081 STHASDLASVSSEEF--VIDDGSSSIIDISDELQDESSSRDSLKKGIELIEDYYLSQSTS 1138
Query: 377 KIEKWM--SKYDRDMEGIDIDMQRKKNHYQDMRDKRINFENTIEK 249
K+E + Y ++ DI++ + D R + IEK
Sbjct: 1139 KLESSVEGKNYLLKVKFKDINVNWDLHDGYDWEATRATISSAIEK 1183
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 30.3 bits (65), Expect = 0.34
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 752 SIFDKEHYRIALAENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTI 609
S+ D++ Y +L ENEA NK+E L + ++ +I + N+ I
Sbjct: 1619 SMADEDEYLFSLMENEAFNKVEDAALQQSLKHGIAYISEITSSNDQNI 1666
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 29.5 bits (63), Expect = 0.59
Identities = 23/117 (19%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Frame = -1
Query: 521 EQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNI--TINETLEKIEKWMSKYD 348
+Q+ ++ N+ E + T E+ +I+ + + S +++L T+ K + MS
Sbjct: 265 QQNQDLYNQTE-ALKSTNEELINQIKSAEELDSAIQVLEERYRTMQRDEVKFQSAMSGMK 323
Query: 347 RDMEG-------IDIDMQRKKNHYQDMRDKRINFENTIEKHDLLMKQWINFKEEREK 198
ME + ++++ K++ Q +++KR + + +E D+ + ++ ERE+
Sbjct: 324 SKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDISISEFEKMVSEREQ 380
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.1 bits (62), Expect = 0.79
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = -1
Query: 599 KSQVEDSVLDSECSSRYVDNWQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSE 420
K ++E S+ E R V+N + + V EAE T E+ + +Q+++ +
Sbjct: 130 KEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYKD 189
Query: 419 VELLTNITINETLEKI-EKWMSKYDRDME 336
+E TI + KI E S+ D D++
Sbjct: 190 MEQENASTIQKLTSKIRELQASQLDHDLQ 218
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/86 (23%), Positives = 35/86 (40%)
Frame = -1
Query: 644 IKTVLYDNEVTIDSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEVINEAENSCIETIE 465
++ VLY +K+ V+D L E + V++ + E + AE+ IE
Sbjct: 194 VRAVLYPRFAEAHRVKADVQDKRLQLEMAKLDVESAKPENLEHCKSAVRSAEDELNGAIE 253
Query: 464 QYKLKIEHEQRIHSEVELLTNITINE 387
K+ E +LL +I N+
Sbjct: 254 HAKILYEQILNKDYNTDLLRSIIKNQ 279
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = -1
Query: 689 ERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDSECSSRYVDNWQVARTEQHL 510
E ++ Q Q+ NHIKT Y+ + + + +DS + R +W + E
Sbjct: 299 ENQDFDDQSTQILNHIKTAYYELTIISKQVLCCILSFPVDSFLAER--SSWLIVHREVG- 355
Query: 509 EVINEAENSCIETIEQYKLKIEHEQR 432
++ N S + ++ K +E R
Sbjct: 356 DLSNALSVSMVRLVDILKFSVESVNR 381
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -1
Query: 395 INETLEKIEKWMSKYDRDMEGIDIDMQRKKNHYQDMRDKRINFENTIEKHD 243
+ LE I K M KYD E D ++ +Q+MR K F++TI D
Sbjct: 378 LKSLLEAIIKKM-KYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSID 427
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = -1
Query: 659 QLRNHIKTVLYDNEVTIDSLKSQVED 582
QLR+++ TV YDN+ ++ ++ S++ D
Sbjct: 403 QLRDYLSTVTYDNKDSLKNMNSKLVD 428
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = -1
Query: 470 IEQYKLKIEHEQR-----IHS--EVELLTNITINETLEKIEKWMSKYDRDME 336
+ YKL I H + +H+ E + + + L+++E W K+D D+E
Sbjct: 266 VSLYKLSINHNNKTTLLAVHNSEERDYMVRQARHHQLQELENWSRKHDEDLE 317
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -1
Query: 653 RNHIKTVLYDNEVTIDSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEVINEAENSCIE 474
++H V++ + L + S+ D E + Y ++ R ++ E+I E + +E
Sbjct: 458 KSHWNRVIHSMVCNVLKLFMDINPSLFD-EVDAEYSES---RRKKEDEEIIREERWTILE 513
Query: 473 TIEQ---YKLKIEHEQRIHSEVELLTNITINET 384
I + KLK ++ +HS E L ++++ T
Sbjct: 514 NIAKENAMKLKSQNPTTVHSTTERLKKLSLDYT 546
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 518 QHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLEKIEKWMSK 354
QH + I+E S + + L EHE+R + E L N + K+ KW+ K
Sbjct: 1706 QHRKAISELNFSLNNNM--FDLVDEHEERPKNRKETLGNPLKGKVFLKLTKWLGK 1758
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 638 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 477
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 476 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 315
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 314 RKKNHY 297
R Y
Sbjct: 966 RNHKPY 971
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.5 bits (58), Expect = 2.4
Identities = 32/176 (18%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Frame = -1
Query: 713 ENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLD--SECSSRYVDN 540
+ ++ K + +IR + K V Y+ + +S + + E+ + + +E S D
Sbjct: 131 KKRSRQKKSNTYVQDEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYATEVSEEPEDT 190
Query: 539 WQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLEKIEKWM 360
+ H +I + S ++ +K + +H E NI++ +K++ +
Sbjct: 191 RAIDVVLDH-RLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNISMIRGSKKVDNHI 249
Query: 359 SKY---DR-----------DMEGIDIDMQRKKNHYQDMRD------KRINFENTIE 252
+ DR D+E +DI+ +RK+ +Y++ + K +N + ++E
Sbjct: 250 KQVILLDREIREDPTTTREDIEAMDIEKERKRENYEEYKQVDRIVAKHLNSDGSVE 305
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 3.2
Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 5/168 (2%)
Frame = -1
Query: 737 EHYRIALAENEAKNKLERRE---LTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDS 567
E + + ENE L + E LT +I QL ++ + L++ E++
Sbjct: 581 EKFEKTIRENEESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAK 640
Query: 566 ECSSRYVDNW--QVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITI 393
E S+ N Q+ TE ++ + + EN E + LK E E ++ +LL +
Sbjct: 641 EDSTSKTSNLLEQLKMTEAEVDSLRK-ENE--ENKQVIALK-ESELVKSNDNKLL----L 692
Query: 392 NETLEKIEKWMSKYDRDMEGIDIDMQRKKNHYQDMRDKRINFENTIEK 249
NE +E + +S+ +ME + + ++ +++++ + +++ K
Sbjct: 693 NEQIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERHNDELDSLNK 740
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 701 KNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVL---DSECSSRYVDNW 537
KN ++R I+ L + ++ + D+ LKS+ ED+ L +S + ++NW
Sbjct: 236 KNGIQRESFIPCIKLLEHRLQVICLDSPNDYRRLKSKTEDTYLYPANSPEVKKALENW 293
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.6 bits (56), Expect = 4.2
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = -1
Query: 503 INEAENSCIETIEQY---KLKIEHEQRIHSEVELLTNITINETLEKIEKWMSKYDRDMEG 333
+N A N+ + TI Y K K++ + + EVE L ++ + +K K++ + R
Sbjct: 401 LNVAANA-VSTIPVYRTTKTKMKKNRFKYVEVEKLPDLILESYGKKAPKFLRVFARSSSH 459
Query: 332 IDIDMQRKKNHYQDMRDKRINFENTIEKHDLLMKQWINFKEE 207
I M R+K + + E+ + D ++ W + K E
Sbjct: 460 IP-KMIRRKRQMDSKKYFSFDKESDRQVIDQVLSDWYSGKHE 500
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 731 YRIALAENEAKNKLERRELTKQ-IRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDSECSS 555
+ + + E +K+E E K+ I+ +R I + Y NE + L ++ +VL + S
Sbjct: 137 HTMEVLEEICADKIETVESEKELIKAIRTCISSKQYGNEDFLSDLVAKAILTVLPKDPSK 196
Query: 554 RYVDNWQVAR 525
VDN +V +
Sbjct: 197 FNVDNIRVVK 206
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.2
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = -1
Query: 794 TLNKNXKTLTSFLNSIFDKEHYRIALAENEAKNKLERRELTKQIRQ--LRNHIKTVL--- 630
+++K + LNS + E Y IA AENE + + E+R + + R +R KT +
Sbjct: 1212 SIDKVRNSFFKNLNSFY--EMYSIAKAENEERFEKEKRRIMSEDRDKLIRGRQKTSIVAK 1269
Query: 629 YDNEVTIDSLKSQVEDSVLDSECSSRYVD 543
Y N+ + +D+ + S +D
Sbjct: 1270 YRNKRELPEDSDDKQDTASKDKNSLETID 1298
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 338 EGIDIDMQRKKNHYQDMRDKRINFENTIEKHDLLMKQWINFKEEREKARI-YRENMTKSA 162
E +D R+K+ Y M N ENT + +++ + N K + A I Y E+ K+
Sbjct: 473 ESDKMDFSRRKDAYISMLPFSPNTENTAHRVTIMVAKLYNIKLDSLIAAIRYVESCLKTG 532
Query: 161 I 159
I
Sbjct: 533 I 533
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 7.3
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = -1
Query: 743 DKEHYRIALAENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDSE 564
D + +LAE +A NK R E + + L + KTV + T +SL+++ + E
Sbjct: 230 DVSSIKASLAEEQASNKSLRGEQERLEKLLVSSNKTVSTLRQ-TENSLRAECKTLQEKLE 288
Query: 563 -CSSRYVDNWQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINE 387
C+ D+ + + ++ ++A + IE +I + SE + L+ NE
Sbjct: 289 KCAINEEDSKLLEELKHNVANYSDAIVHKDKLIEDLSTRISEFDNLKSERDTLS--IKNE 346
Query: 386 TLEKI 372
LEK+
Sbjct: 347 KLEKL 351
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 7.3
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = -1
Query: 737 EHYRIALAENEAKN-KLERRELTKQ-IRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDSE 564
EH I EN K + E EL ++ +L+ KT +N DS+ + ++
Sbjct: 175 EHIIIPRLENTIKYIESELEELEREDFTRLKKVQKTK--ENAEKADSVTKEEHQGGSNTL 232
Query: 563 CSSRYVDNWQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELL 408
++ V E EVINE ENS +T + E+ S+ E++
Sbjct: 233 QQTKDVGGAIAPAAEVGKEVINEVENSKDDTYSLPSTSTDDEEENDSDEEVI 284
>SPBC21.04 |med8|sep15|mediator complex subunit
Med8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 25.4 bits (53), Expect = 9.7
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Frame = -1
Query: 542 NWQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLEKIEKW 363
N+ + ++ H N A +S T++ + E + + LLT + + L ++E+W
Sbjct: 49 NFNILLSQIHSLSNNLAAHS--HTLQTTSIYPSLEFPVKEQEPLLTTLLRTKALPEVEEW 106
Query: 362 MSKYDRDMEGIDIDMQRKKNHYQD--MRDKRINFENTIEKHDLLMKQWINFKEEREKA 195
+ ++ E I Q KK D +D+ + I + W +F R+++
Sbjct: 107 EANTLQEYEA-SISSQPKKKEANDAYQKDQLWDQARIIFMEERENYSWFDFVTRRQES 163
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = -1
Query: 446 EHEQRIHSEVELLTNITINETLEKIEKWMSKYDRDMEGIDIDMQRKKNHYQD 291
E E+R +E+E +++ E + +E W+ D+ ME + + + D
Sbjct: 202 EEEEREEAELEFVSDDEDEEEISDLEDWLGS-DQSMETSESEEEESSESESD 252
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 32 AYARKRYKRMNFISSCVPSSFCLLCKGLSGVLQASHATTLVQL*QTLS 175
++ ++ + NF++S V + L KGL+ L+ S+ T L L TL+
Sbjct: 195 SFLQQNDENSNFLNSRVNNDEFQLLKGLNNELKKSNGTLLTCLSGTLN 242
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 574 WIRNAQAVTWIIGKWLEP 521
+IRN++ WI+ W EP
Sbjct: 255 FIRNSEVGRWIVDLWFEP 272
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/58 (18%), Positives = 33/58 (56%)
Frame = -1
Query: 326 IDMQRKKNHYQDMRDKRINFENTIEKHDLLMKQWINFKEEREKARIYRENMTKSAIIV 153
ID+++++ +++ + N+++ +++ +N +EREK + Y E + + ++V
Sbjct: 176 IDLRKREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKEREKIKSYIEMLGLAKMLV 233
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 404 NITINETLEKIEKWMSKYDRDMEGIDIDMQRKKNHY 297
N I + L+K S R ++G +D +R+K+HY
Sbjct: 74 NGIIKKILDKRLPMSSNMARTVKGNSLDEERRKDHY 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,502
Number of Sequences: 5004
Number of extensions: 60170
Number of successful extensions: 269
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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