Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n02
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0254 - 15377689-15378357,15378807-15379241,15380326-153803...    28   7.2  
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495...    28   9.5  
08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810...    28   9.5  
05_07_0063 - 27428056-27428184,27428321-27428460,27428698-274289...    28   9.5  
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346...    28   9.5  

>11_04_0254 -
           15377689-15378357,15378807-15379241,15380326-15380370,
           15380675-15381145
          Length = 539

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 493 QKNLKSAE*NKTQSLMYLYSILDPFCLLWKIGVRARLVYLHLNRRKSK 350
           QK L     NKT  L+ ++++ + F +L +IGV  +++     R K K
Sbjct: 218 QKKLLQELVNKTIKLLSIFNVEEYFSILARIGVIGKVMCARAERLKKK 265


>10_01_0003 +
           46158-46428,46588-46706,46819-46928,48977-49415,
           49511-49633,49805-50106,50143-50350,50729-51448
          Length = 763

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -3

Query: 568 FQKKKMNYPLRTNYYFHRVLLVLRLQKNLKS--AE*NKTQSLMYLYSILDPFCLLWKIGV 395
           +++ K   P    Y F  V+L L   K      +E  +  S   L+S+LDP    W + V
Sbjct: 639 YRRSKPLTPKSDIYSFGIVILQLLTGKQAAGLPSEVRRAMSSGKLWSLLDPTAGEWPLEV 698

Query: 394 RARLVYLHLNRRKSKQPD 341
             RL  L L   ++  P+
Sbjct: 699 ARRLAELGLKCSEAASPE 716


>08_02_1400 +
           26779193-26779245,26779622-26779766,26779950-26781059,
           26781153-26781404,26782150-26782230,26782623-26782770,
           26782858-26783264,26783557-26783613
          Length = 750

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -3

Query: 205 LLCRTQMSSPQKNMLRRRFKKRTTPLYQLAGDTR----DSRSSLYVNCLGLTRKSITNIL 38
           L  R ++ SP KN+L R+F      L   AGD R    DS   L ++C   ++K+ T +L
Sbjct: 201 LQARKRLLSPLKNVLNRQF--HGDILNISAGDARFELSDSARKLNISCFQDSKKANTGML 258


>05_07_0063 -
           27428056-27428184,27428321-27428460,27428698-27428926,
           27429231-27429281,27429411-27429636,27430230-27430300,
           27430466-27430585,27430671-27430865,27431088-27431152,
           27431232-27431322,27431607-27431707,27431767-27431817,
           27432076-27432177,27432406-27432510,27432600-27432663,
           27433023-27433151
          Length = 622

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 536 HKLLFSPRTVGLEITEKPQISRVKQDPIPYVPI 438
           H  ++SP  V L + + P +++V   P P +P+
Sbjct: 126 HLSIYSPNVVNLTLIDLPGLTKVAVGPFPDLPL 158


>01_01_0471 -
           3467275-3467351,3467526-3467895,3468258-3468555,
           3468680-3469734,3469823-3470467
          Length = 814

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 644 YLRWINIKTTLRGVTPKRVPN 582
           YLRW    T +R  TPKR+ N
Sbjct: 610 YLRWYRRSTRIRLCTPKRISN 630


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,046
Number of Sequences: 37544
Number of extensions: 333106
Number of successful extensions: 874
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)