Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n02
         (777 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024274-1|ABC86336.1|  273|Drosophila melanogaster IP14839p pro...    97   3e-20
AE014297-4319|AAN14151.1|  273|Drosophila melanogaster CG11876-P...    97   3e-20
AE014297-4318|AAN14150.1|  273|Drosophila melanogaster CG11876-P...    97   3e-20
AY075196-1|AAL68065.1|  608|Drosophila melanogaster AT13609p pro...    31   1.3  
AE014134-1621|AAF52762.1|  602|Drosophila melanogaster CG17005-P...    31   1.3  
AY118770-1|AAM50630.1|  390|Drosophila melanogaster GH11073p pro...    31   1.8  
AE014297-4645|AAF57072.2|  390|Drosophila melanogaster CG2267-PA...    31   1.8  

>BT024274-1|ABC86336.1|  273|Drosophila melanogaster IP14839p
           protein.
          Length = 273

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 3/112 (2%)
 Frame = -2

Query: 392 GEIGLPSL---KQEEIQAARLIVIXXXXXXXXXXXXXXKRMRHRWARVKQRRRQIKEKKF 222
           GE+  P L   K ++++AARLIVI              ++M+  WA+V+QRR   KEK F
Sbjct: 161 GEVIAPPLDKSKSDKMEAARLIVIRRRKMKKHKLKKLRRKMKFEWAKVRQRREMRKEKAF 220

Query: 221 QNELLALVQNANEFSAEKYVAEKIQKANYTPIPTRWRHKRLPEFIIRQLLGI 66
           Q +L++ ++ A  FSAE++VAE +++AN TP+P  W+ +RLP FII+Q LGI
Sbjct: 221 QAKLISQIKQAEAFSAEQHVAEILRQANETPLPRFWKGRRLPAFIIKQKLGI 272


>AE014297-4319|AAN14151.1|  273|Drosophila melanogaster CG11876-PC,
           isoform C protein.
          Length = 273

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 3/112 (2%)
 Frame = -2

Query: 392 GEIGLPSL---KQEEIQAARLIVIXXXXXXXXXXXXXXKRMRHRWARVKQRRRQIKEKKF 222
           GE+  P L   K ++++AARLIVI              ++M+  WA+V+QRR   KEK F
Sbjct: 161 GEVIAPPLDKSKSDKMEAARLIVIRRRKMKKHKLKKLRRKMKFEWAKVRQRREMRKEKAF 220

Query: 221 QNELLALVQNANEFSAEKYVAEKIQKANYTPIPTRWRHKRLPEFIIRQLLGI 66
           Q +L++ ++ A  FSAE++VAE +++AN TP+P  W+ +RLP FII+Q LGI
Sbjct: 221 QAKLISQIKQAEAFSAEQHVAEILRQANETPLPRFWKGRRLPAFIIKQKLGI 272


>AE014297-4318|AAN14150.1|  273|Drosophila melanogaster CG11876-PB,
           isoform B protein.
          Length = 273

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 3/112 (2%)
 Frame = -2

Query: 392 GEIGLPSL---KQEEIQAARLIVIXXXXXXXXXXXXXXKRMRHRWARVKQRRRQIKEKKF 222
           GE+  P L   K ++++AARLIVI              ++M+  WA+V+QRR   KEK F
Sbjct: 161 GEVIAPPLDKSKSDKMEAARLIVIRRRKMKKHKLKKLRRKMKFEWAKVRQRREMRKEKAF 220

Query: 221 QNELLALVQNANEFSAEKYVAEKIQKANYTPIPTRWRHKRLPEFIIRQLLGI 66
           Q +L++ ++ A  FSAE++VAE +++AN TP+P  W+ +RLP FII+Q LGI
Sbjct: 221 QAKLISQIKQAEAFSAEQHVAEILRQANETPLPRFWKGRRLPAFIIKQKLGI 272


>AY075196-1|AAL68065.1|  608|Drosophila melanogaster AT13609p
           protein.
          Length = 608

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -3

Query: 526 YFHRVLLVLRLQKNLKSAE*NKTQSLMYLYSILDPFCLLWKIGVRARLVYLHLNRRKSKQ 347
           +F R+ +VL + + L  A     Q L  + SI DP    WK       VYLHLN R + +
Sbjct: 380 HFRRIPIVLEVHRILDRATIIAKQELEEVESIDDP---KWKEDSYVEHVYLHLNIRTNIK 436

Query: 346 P 344
           P
Sbjct: 437 P 437


>AE014134-1621|AAF52762.1|  602|Drosophila melanogaster CG17005-PA
           protein.
          Length = 602

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -3

Query: 526 YFHRVLLVLRLQKNLKSAE*NKTQSLMYLYSILDPFCLLWKIGVRARLVYLHLNRRKSKQ 347
           +F R+ +VL + + L  A     Q L  + SI DP    WK       VYLHLN R + +
Sbjct: 369 HFRRIPIVLEVHRILDRATIIAKQELEEVESIDDP---KWKEDSYVEHVYLHLNIRTNIK 425

Query: 346 P 344
           P
Sbjct: 426 P 426


>AY118770-1|AAM50630.1|  390|Drosophila melanogaster GH11073p
           protein.
          Length = 390

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
 Frame = -2

Query: 629 NIKTTLRGVTPKRVPNIIANLPKEKNELSATHKLLFSPRTVGLEITEKP-------QISR 471
           N  TT+R  +P R+P +I +       ++ T     + RT   ++  K        QIS 
Sbjct: 228 NKLTTIR--SPSRIPKLITSHVANSASVTKTQSAYQARRTYDAKVAAKRKILVSRGQISS 285

Query: 470 VKQDPIPYVPILN-PRSI 420
           VKQ P+P    LN P+SI
Sbjct: 286 VKQKPLPDTSHLNVPKSI 303


>AE014297-4645|AAF57072.2|  390|Drosophila melanogaster CG2267-PA
           protein.
          Length = 390

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
 Frame = -2

Query: 629 NIKTTLRGVTPKRVPNIIANLPKEKNELSATHKLLFSPRTVGLEITEKP-------QISR 471
           N  TT+R  +P R+P +I +       ++ T     + RT   ++  K        QIS 
Sbjct: 228 NKLTTIR--SPSRIPKLITSHVANSASVTKTQSAYQARRTYDAKVAAKRKILVSRGQISS 285

Query: 470 VKQDPIPYVPILN-PRSI 420
           VKQ P+P    LN P+SI
Sbjct: 286 VKQKPLPDTSHLNVPKSI 303


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,899,229
Number of Sequences: 53049
Number of extensions: 599622
Number of successful extensions: 1557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3602427675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)