Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11n02
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032648-6|CAC35867.1|  244|Caenorhabditis elegans Hypothetical ...    31   0.92 
AF303259-1|AAG50217.1|  244|Caenorhabditis elegans 2O16 protein.       31   0.92 
AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AC006795-1|AAF59492.2|  435|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AL032648-6|CAC35867.1|  244|Caenorhabditis elegans Hypothetical
           protein Y54G9A.7 protein.
          Length = 244

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 251 RRRQIK-EKKFQNELLALVQNANEFSAEKYVAEKIQKAN 138
           R +++K E++FQ  + +L+     F+ EKYV + I+ AN
Sbjct: 141 REKKLKSEREFQKRMKSLLTELEAFNPEKYVKDTIRMAN 179


>AF303259-1|AAG50217.1|  244|Caenorhabditis elegans 2O16 protein.
          Length = 244

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 251 RRRQIK-EKKFQNELLALVQNANEFSAEKYVAEKIQKAN 138
           R +++K E++FQ  + +L+     F+ EKYV + I+ AN
Sbjct: 141 REKKLKSEREFQKRMKSLLTELEAFNPEKYVKDTIRMAN 179


>AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical
           protein F54A5.2 protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 414 RQNGSRIEYRYIRDWVLFYSADLRFFCNL 500
           R+NG  I Y +I+ W    S ++  FCNL
Sbjct: 229 RRNGKTIFYNHIKAWAFPTSNEVNIFCNL 257


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical protein
            F57C7.1b protein.
          Length = 1087

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
 Frame = -2

Query: 602  TPKRVPNIIAN-LPKEKNELSATHKLL--FSPRTVGLEITEKPQISRVKQDPIPYVPILN 432
            TP  +P +I+  L    +  +   K++    P  +      KP+ S      +PY P  N
Sbjct: 756  TPMMIPELISPALSVRSSSRAPVPKIIDDIGPSPIKARKISKPRASMASNVSVPYTPTGN 815

Query: 431  PRSILPLVEDWGKGEIGLPSLKQEEI 354
            PR   P      K  I  P+   E I
Sbjct: 816  PRGRKPKKSGRPKKNIYSPATVSERI 841


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
            F57C7.1a protein.
          Length = 1209

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
 Frame = -2

Query: 602  TPKRVPNIIAN-LPKEKNELSATHKLL--FSPRTVGLEITEKPQISRVKQDPIPYVPILN 432
            TP  +P +I+  L    +  +   K++    P  +      KP+ S      +PY P  N
Sbjct: 756  TPMMIPELISPALSVRSSSRAPVPKIIDDIGPSPIKARKISKPRASMASNVSVPYTPTGN 815

Query: 431  PRSILPLVEDWGKGEIGLPSLKQEEI 354
            PR   P      K  I  P+   E I
Sbjct: 816  PRGRKPKKSGRPKKNIYSPATVSERI 841


>AC006795-1|AAF59492.2|  435|Caenorhabditis elegans Hypothetical
           protein Y50D4B.7 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 530 LLFSPRTVGLEITEKPQISRVKQDPIPYVPILNPRSILPLVEDWGK 393
           ++ +P   GL +        +  + I Y PI +   I+PL  DWG+
Sbjct: 33  IISAPIAYGLTVLTSNGSEPMSHENISYTPIRSRGDIIPLNPDWGE 78


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 551 ELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYVPILN 432
           +LSA H  ++ P+    ++++ P  S     P+P  P LN
Sbjct: 257 QLSAHHGYVYGPQQAMPQLSQYPSPSTAAPAPVPEQPTLN 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,320,130
Number of Sequences: 27780
Number of extensions: 326540
Number of successful extensions: 914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)