Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m24
         (272 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   1.2  
02_05_1316 - 35679456-35679538,35679660-35679722,35679824-356799...    26   3.6  
02_05_1317 - 35683659-35683756,35683904-35683966,35684068-356841...    25   6.3  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 54  SSCSTCKW*CTESRGRSMGRSKNRR 128
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>02_05_1316 -
           35679456-35679538,35679660-35679722,35679824-35679938,
           35680271-35680372,35680667-35680736,35681182-35681273,
           35681542-35681622,35681697-35681740,35681829-35681976
          Length = 265

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 15  EHPPXDMFSEFNISSCSTCKW*CTESRGRSMGRS 116
           ++ P D F +     C TC+W  +E   R  G++
Sbjct: 41  QNVPGDFFVDHRCIDCQTCRWMASEVFKRVDGKA 74


>02_05_1317 -
           35683659-35683756,35683904-35683966,35684068-35684182,
           35684385-35684486,35684687-35684756,35684878-35684952,
           35685188-35685279,35685386-35685493,35685560-35685640,
           35685728-35685771,35685858-35685984
          Length = 324

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 15  EHPPXDMFSEFNISSCSTCKW*CTESRGRSMGRS 116
           ++ P D F +     C TC+W   E   R  G++
Sbjct: 34  QNVPGDFFVDHRCIDCQTCRWMAPEVFKRVDGKA 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,336,420
Number of Sequences: 37544
Number of extensions: 47830
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)