Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m23
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...   256   2e-69
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   1.8  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   3.2  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   5.5  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    26   7.3  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    26   7.3  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    25   9.6  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   9.6  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.6  

>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score =  256 bits (628), Expect = 2e-69
 Identities = 123/228 (53%), Positives = 160/228 (70%)
 Frame = -3

Query: 797 KXXEKLGIPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRR 618
           K   K   PY I+ ARD +KLL+RSVPF QA +++ D + CDIIKI + +R KE F+KRR
Sbjct: 96  KTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQDGVACDIIKIGNILRNKERFVKRR 155

Query: 617 QRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIKS 438
           QRLIG  G TLK++ELLT+CY+LVQG TV+ +G YKGL +VRRIVED M NIHP+Y+IK 
Sbjct: 156 QRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVRRIVEDCMHNIHPIYHIKE 215

Query: 437 LMIKRELMKDPRLKNESWDRFLPTFKSKNVXXXXXXXXXXXXXXXXXXXXXPESKIDKEL 258
           LMIKREL KDP L NESWDRFLP FK +NV                     P SK+D E+
Sbjct: 216 LMIKRELAKDPTLANESWDRFLPQFKKRNVARRKPAKIRETKEYTPFPPAQPPSKLDLEI 275

Query: 257 ATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
            +GEYFLK+++K+ K   EK+E+Q + K+ ++++R K FIPP+E  +K
Sbjct: 276 ESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKERMKAFIPPEESSKK 323


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -3

Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
           E K+ K+ A  E   +++ ++ K   E+Q+++ + K    E+     +   EK+EK
Sbjct: 77  EKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEK 132


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 239 LKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEK 123
           L+E +KK +  +E+ EK+A  K  RDE  +K      +K
Sbjct: 27  LEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDK 65


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 571 NSMDFNVTP*GPINLCRLFKKVSFLRTNELILIMSHPISS 690
           N+  F+  P  PI+ CR+ ++  F   N L+     P+S+
Sbjct: 96  NNYQFSTAPLNPIDACRVGERKVFTTGNVLLSADRQPLST 135


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 218 AKIHHEKQEKQAQAKRVRDEQRQKD 144
           AK  H K E+QA+ +R  DE+ + D
Sbjct: 214 AKSKHYKAERQAEKERYEDEREKLD 238


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 551 KHSILLIIQWILM*HPEVLSTSAVSSKRFLFCEQ 652
           KH +LL  QW     P+V  T  +S   F + E+
Sbjct: 156 KHPLLLKYQWYWRVEPDVAFTCDISYDPFYYMEE 189


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -3

Query: 245 YFLKEDQKKAKIHHEK---QEKQAQAKRVRDEQRQKDFIPPQEKIEKP 111
           Y LKE ++     +E+   +EK+ ++  V+D +  KD +  +EK EKP
Sbjct: 89  YNLKEFEELEAPGNEEVKAKEKRIKSPDVKDFKLPKDILKVKEKSEKP 136


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 607 INLCRLFKKVSFLRTNELILIMSHPISSSSTREACSNGTLLDNSFMKSR 753
           IN+ R F +   +     I   S P+S+S+  + CS GT+L  S + +R
Sbjct: 8   INMQRSFSRQFHISVRNSIQ-SSKPLSNSTPLKGCSVGTILIRSPILTR 55


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -3

Query: 281 ESKIDKELATGEYF----LKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
           E + +++L  GE      ++E +KK ++    +E+Q   K+  + Q  +D+   Q K+++
Sbjct: 258 EIRDEEQLFAGEKLTQAEIRELEKKKELLRIAEERQRLEKQATEYQMPEDYFTEQGKLDR 317


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 611 LIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTM 471
           LIGP+G TLK +E  +   + ++G      G  +    VR  +E+ +
Sbjct: 206 LIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRSDPSVRGNMEEDL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,583
Number of Sequences: 5004
Number of extensions: 49901
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)