Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m23
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0225 - 15995436-15995555,15995655-15995735,15995813-159959... 242 2e-64
01_06_0480 + 29639124-29639412,29639476-29639552,29639639-296397... 224 6e-59
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318... 33 0.20
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 32 0.47
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044... 32 0.62
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285... 31 1.1
04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103 31 1.1
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 31 1.4
11_06_0291 + 22008412-22012284 30 2.5
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 30 2.5
03_06_0443 + 33973229-33973311,33973422-33973510,33974873-339750... 30 2.5
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 30 2.5
11_06_0284 + 21909758-21913645 29 3.3
04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378 29 3.3
09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629 29 5.8
03_03_0135 + 14748712-14748718,14748807-14748873,14748962-147490... 29 5.8
02_05_0785 - 31730300-31730701,31730785-31730856,31730940-317328... 29 5.8
>10_08_0225 -
15995436-15995555,15995655-15995735,15995813-15995956,
15996305-15996386,15996479-15996561,15996655-15996759,
15996869-15996907,15997004-15997060,15997701-15997769,
15997959-15998069,15998382-15998564
Length = 357
Score = 242 bits (593), Expect = 2e-64
Identities = 120/222 (54%), Positives = 154/222 (69%), Gaps = 1/222 (0%)
Frame = -3
Query: 773 PYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQG 594
PYII+KA++ +KLLSRSVP QA ++L+DE+ CDIIKI S +R KE F+KRR+RL+GP
Sbjct: 77 PYIIVKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKIGSIIRNKERFVKRRERLLGPNL 136
Query: 593 VTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNI-HPMYNIKSLMIKREL 417
TLK+IE+LT CY+LVQGNTV+A+G +KGL QVRR+VED +KNI HP+Y+IK L+IKREL
Sbjct: 137 STLKAIEILTGCYILVQGNTVAAMGSWKGLKQVRRVVEDCIKNIKHPVYHIKELLIKREL 196
Query: 416 MKDPRLKNESWDRFLPTFKSKNVXXXXXXXXXXXXXXXXXXXXXPESKIDKELATGEYFL 237
K+P L NESWDRFLP FK KNV SKID EL +GEYF+
Sbjct: 197 AKNPALANESWDRFLPKFKKKNV-KQKKPITKEKKPYTPFPPPQQPSKIDLELESGEYFM 255
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEKP 111
+ +K AK EK EKQ++ +R+ F+PP+E P
Sbjct: 256 SDKKKSAKKWQEKLEKQSEKAEENKRKREAAFVPPKEDTATP 297
>01_06_0480 +
29639124-29639412,29639476-29639552,29639639-29639749,
29639944-29640012,29640650-29640706,29640814-29640852,
29640957-29641061,29641158-29641240,29641333-29641414,
29641760-29641903,29641987-29642067,29642166-29642294
Length = 421
Score = 224 bits (548), Expect = 6e-59
Identities = 115/222 (51%), Positives = 148/222 (66%), Gaps = 1/222 (0%)
Frame = -3
Query: 773 PYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQG 594
PYIIIKA + +KLLSRSVP QA ++L+DE+ C IIKI S +R KE F+KRR RL+GP
Sbjct: 138 PYIIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNL 197
Query: 593 VTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNI-HPMYNIKSLMIKREL 417
TLK+IE+LT CY+LVQGNT +A+G +KGL QV R+VED +KN+ HP+Y+IK L+IKREL
Sbjct: 198 STLKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDCIKNVKHPVYHIKELLIKREL 257
Query: 416 MKDPRLKNESWDRFLPTFKSKNVXXXXXXXXXXXXXXXXXXXXXPESKIDKELATGEYFL 237
+K+P L +ESWD+FLP FK KNV SKID EL +GE F+
Sbjct: 258 VKNPALAHESWDKFLPKFKKKNV-KQKKPLTKEKKQYTPFPPPQQPSKIDLELESGECFM 316
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEKP 111
+ +K AK EK EKQ+Q +R+ F+ P E I P
Sbjct: 317 SDKKKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATP 358
>02_05_0567 +
30029862-30030136,30030299-30030384,30031663-30031811,
30032581-30032685,30032779-30032895,30033251-30033394,
30033519-30033668
Length = 341
Score = 33.5 bits (73), Expect = 0.20
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G +LK +E T+C VL++G
Sbjct: 211 RILGPRGNSLKRVEATTDCRVLIRG 235
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
RL+GP+G +LK +E T+C V ++G
Sbjct: 159 RLLGPRGNSLKRVEATTQCRVYIRG 183
>01_06_1593 +
38502884-38502993,38503580-38503665,38504352-38504497,
38504817-38504933,38505028-38505144,38505858-38506001,
38506099-38506251
Length = 290
Score = 31.9 bits (69), Expect = 0.62
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
RL+GP+G +LK +E T+C V ++G
Sbjct: 159 RLLGPRGNSLKRVEASTQCRVYIRG 183
>05_05_0237 -
23526613-23527178,23527979-23528066,23528384-23528527,
23528674-23528790,23528860-23528970,23530911-23531062,
23531362-23531450,23531664-23531761
Length = 454
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
RL+GP+G +LK IE T C V ++G
Sbjct: 156 RLLGPRGNSLKRIEASTGCRVFIRG 180
>04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEK 123
E K KE L E ++ K +EK+ + + +V + +R+K F+ QEK
Sbjct: 124 EEKERKEKELRAQILAEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEK 176
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
RL+GP+G +LK +E T C V ++G
Sbjct: 156 RLLGPRGNSLKRVEASTGCRVFIRG 180
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = -3
Query: 230 DQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIE 117
+++K + HHEKQE + + K V++E+R+++ +E+ E
Sbjct: 453 EERKEEPHHEKQEHKKE-KEVKEEERKEEQNKEKEERE 489
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G +LK +E T C V ++G
Sbjct: 158 RILGPRGNSLKRVEASTGCRVFIRG 182
>03_06_0443 +
33973229-33973311,33973422-33973510,33974873-33975024,
33975463-33975579,33975729-33975776,33976169-33976312,
33976715-33976858
Length = 258
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G +LK +E T C V ++G
Sbjct: 114 RILGPRGNSLKRVEASTGCRVFIRG 138
>03_05_1149 + 30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 716 FEQASRVLDDEIGCDIIKI-NSFVRKKETFLKRRQRLI 606
F Q VL+D++GCD+I++ N V+ ++ + +L+
Sbjct: 1071 FRQEMHVLEDQVGCDLIQVDNRAVQSLLPYMSKFMKLL 1108
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -3
Query: 230 DQKKAKIHHEKQEKQAQAKRVRDEQRQK 147
+++K + HHEKQEK+ + +R + Q ++
Sbjct: 471 EERKEEEHHEKQEKEKEEERKEEGQNEE 498
>04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378
Length = 419
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 319 IKNLILHSHLHNLKVKLIRSWP 254
+KN LH +LHN ++ ++SWP
Sbjct: 185 MKNGNLHEYLHNSEIAAVQSWP 206
>09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629
Length = 134
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 230 DQKKAKIHHEKQEKQAQAKRVRDEQRQK 147
D+KK K EK+EK+ + K+ ++E+ +K
Sbjct: 76 DEKKEKEEKEKKEKEEKEKKEKEEKEKK 103
>03_03_0135 +
14748712-14748718,14748807-14748873,14748962-14749076,
14749179-14749382,14749614-14749742,14749822-14749989,
14750648-14750808,14751490-14751580,14752277-14752436,
14752782-14752815,14753122-14753211,14754780-14754893,
14755000-14755123,14755652-14755762,14756378-14756478,
14756571-14756703
Length = 602
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -1
Query: 325 KPIKNLILHSHLHNL-KVKLIRSWPQGNTSLRKIKRRQRFTMKNKR-NRLK 179
+P +++L S + + +++IRS+P G LR + KNKR N+LK
Sbjct: 313 QPKSSILLSSIMTSFFSLRIIRSFPSGMNFLRHSNKDLNMKWKNKRSNKLK 363
>02_05_0785 -
31730300-31730701,31730785-31730856,31730940-31732864,
31733000-31733150,31733944-31734009,31734247-31734645
Length = 1004
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 662 INSFVRKKETFLKRRQRLIGPQGVTLKSIELLTECYVLVQ 543
+N+ + ++ +LK R+ L G G S E++ C+ +Q
Sbjct: 744 LNAVIEAEKMYLKHRRSLTGQNGFNTASCEMMHGCFTGLQ 783
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,833,740
Number of Sequences: 37544
Number of extensions: 271746
Number of successful extensions: 858
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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