Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m23
(811 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016778-1|AAH16778.1| 381|Homo sapiens KRR1, small subunit (SS... 271 2e-72
BC005225-1|AAH05225.1| 362|Homo sapiens Unknown (protein for IM... 271 2e-72
BC026107-1|AAH26107.1| 381|Homo sapiens KRR1, small subunit (SS... 269 7e-72
BC033887-1|AAH33887.1| 381|Homo sapiens KRR1, small subunit (SS... 268 1e-71
U55766-1|AAB00557.1| 288|Homo sapiens Rev interacting protein R... 224 3e-58
EF010919-1|ABJ97679.1| 324|Homo sapiens HRB2 variant B protein. 173 5e-43
BC000048-1|AAH00048.1| 304|Homo sapiens DnaJ (Hsp40) homolog, s... 33 0.92
AK001496-1|BAA91724.1| 304|Homo sapiens protein ( Homo sapiens ... 33 0.92
BC039263-1|AAH39263.1| 609|Homo sapiens GRID1 protein protein. 32 2.1
AL683834-1|CAI39587.1| 791|Homo sapiens glutamate receptor, ion... 32 2.1
AL596135-1|CAI39475.1| 791|Homo sapiens glutamate receptor, ion... 32 2.1
AB033046-1|BAA86534.1| 791|Homo sapiens KIAA1220 protein protein. 32 2.1
DQ323998-1|ABC88600.1| 333|Homo sapiens QKI protein. 31 3.7
BC019917-1|AAH19917.1| 341|Homo sapiens quaking homolog, KH dom... 31 3.7
BC012222-1|AAH12222.1| 293|Homo sapiens QKI protein protein. 31 3.7
AY780788-1|AAV98358.1| 313|Homo sapiens quaking isoform protein. 31 3.7
AL356119-3|CAI23024.1| 325|Homo sapiens quaking homolog, KH dom... 31 3.7
AL356119-2|CAI23023.1| 319|Homo sapiens quaking homolog, KH dom... 31 3.7
AL356119-1|CAI23022.1| 341|Homo sapiens quaking homolog, KH dom... 31 3.7
AL031781-3|CAI21653.1| 325|Homo sapiens quaking homolog, KH dom... 31 3.7
AL031781-2|CAI21652.1| 319|Homo sapiens quaking homolog, KH dom... 31 3.7
AL031781-1|CAI21651.1| 341|Homo sapiens quaking homolog, KH dom... 31 3.7
AK027309-1|BAB55032.1| 323|Homo sapiens protein ( Homo sapiens ... 31 3.7
AF142422-1|AAF63417.1| 341|Homo sapiens QUAKING isoform 3 protein. 31 3.7
AF142421-1|AAF63416.1| 337|Homo sapiens QUAKING isoform 5 protein. 31 3.7
AF142420-1|AAF63415.1| 315|Homo sapiens QUAKING isoform 4 protein. 31 3.7
AF142419-1|AAF63414.1| 363|Homo sapiens QUAKING isoform 6 protein. 31 3.7
AF142418-1|AAF63413.1| 347|Homo sapiens QUAKING isoform 2 protein. 31 3.7
AF142417-1|AAF63412.1| 321|Homo sapiens QUAKING isoform 1 protein. 31 3.7
AB067808-1|BAB69681.1| 325|Homo sapiens RNA binding protein HQK... 31 3.7
AB067801-1|BAB69499.1| 319|Homo sapiens RNA binding protein HQK... 31 3.7
AB067800-1|BAB69498.1| 325|Homo sapiens RNA binding protein HQK... 31 3.7
AB067799-1|BAB69497.1| 319|Homo sapiens RNA binding protein HQK... 31 3.7
AB067798-1|BAB69496.1| 341|Homo sapiens RNA binding protein HQK... 31 3.7
AK092214-1|BAC03831.1| 194|Homo sapiens protein ( Homo sapiens ... 27 5.3
AL832032-1|CAD89911.1| 193|Homo sapiens hypothetical protein pr... 27 5.3
BC001673-1|AAH01673.2| 185|Homo sapiens CCDC32 protein protein. 27 5.4
BC094702-1|AAH94702.1| 627|Homo sapiens MAP1A protein protein. 31 6.5
BC068565-1|AAH68565.1| 644|Homo sapiens SULF1 protein protein. 31 6.5
BC016029-1|AAH16029.1| 639|Homo sapiens CTTNBP2 N-terminal like... 31 6.5
AY101175-1|AAM76860.1| 871|Homo sapiens extracellular sulfatase... 31 6.5
AL354760-2|CAI22308.1| 639|Homo sapiens novel protein protein. 31 6.5
AK074873-1|BAC11258.1| 540|Homo sapiens protein ( Homo sapiens ... 31 6.5
AF545571-1|AAO33315.1| 871|Homo sapiens sulfatase SULF1 precurs... 31 6.5
AF200415-1|AAF08305.2| 1825|Homo sapiens proliferation-related p... 31 6.5
AF095910-1|AAF03480.1| 378|Homo sapiens microtubule-associated ... 31 6.5
AB037854-1|BAA92671.1| 652|Homo sapiens KIAA1433 protein protein. 31 6.5
AB029000-1|BAA83029.1| 818|Homo sapiens KIAA1077 protein protein. 31 6.5
>BC016778-1|AAH16778.1| 381|Homo sapiens KRR1, small subunit (SSU)
processome component, homolog (yeast) protein.
Length = 381
Score = 271 bits (664), Expect = 2e-72
Identities = 136/223 (60%), Positives = 166/223 (74%), Gaps = 2/223 (0%)
Frame = -3
Query: 773 PYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQG 594
PYIII+ARD +KLL+RSV FEQA R+L D++ CDIIKI S VR KE F+KRRQRLIGP+G
Sbjct: 110 PYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKG 169
Query: 593 VTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIKSLMIKRELM 414
TLK++ELLT CY++VQGNTVSA+GP+ GL +VR++V DTMKNIHP+YNIKSLMIKREL
Sbjct: 170 STLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELA 229
Query: 413 KDPRLKNESWDRFLPTFKSKNV-XXXXXXXXXXXXXXXXXXXXXPESKIDKELATGEYFL 237
KD L+++SW+RFLP FK KNV PES+IDKELA+GEYFL
Sbjct: 230 KDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFL 289
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEK-IEKP 111
K +QKK + + KQA+A R E+R K FIPP+EK I KP
Sbjct: 290 KANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKP 332
>BC005225-1|AAH05225.1| 362|Homo sapiens Unknown (protein for
IMAGE:3685682) protein.
Length = 362
Score = 271 bits (664), Expect = 2e-72
Identities = 136/223 (60%), Positives = 166/223 (74%), Gaps = 2/223 (0%)
Frame = -3
Query: 773 PYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQG 594
PYIII+ARD +KLL+RSV FEQA R+L D++ CDIIKI S VR KE F+KRRQRLIGP+G
Sbjct: 110 PYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKG 169
Query: 593 VTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIKSLMIKRELM 414
TLK++ELLT CY++VQGNTVSA+GP+ GL +VR++V DTMKNIHP+YNIKSLMIKREL
Sbjct: 170 STLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELA 229
Query: 413 KDPRLKNESWDRFLPTFKSKNV-XXXXXXXXXXXXXXXXXXXXXPESKIDKELATGEYFL 237
KD L+++SW+RFLP FK KNV PES+IDKELA+GEYFL
Sbjct: 230 KDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFL 289
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEK-IEKP 111
K +QKK + + KQA+A R E+R K FIPP+EK I KP
Sbjct: 290 KANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKP 332
>BC026107-1|AAH26107.1| 381|Homo sapiens KRR1, small subunit (SSU)
processome component, homolog (yeast) protein.
Length = 381
Score = 269 bits (660), Expect = 7e-72
Identities = 135/223 (60%), Positives = 165/223 (73%), Gaps = 2/223 (0%)
Frame = -3
Query: 773 PYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQG 594
PYIII+ARD +KLL+RSV FEQA R+L D++ CDIIKI S VR KE F+KRRQRLIGP+G
Sbjct: 110 PYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKG 169
Query: 593 VTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIKSLMIKRELM 414
TLK++ELLT CY++VQGNTVSA+GP+ GL +VR++ DTMKNIHP+YNIKSLMIKREL
Sbjct: 170 STLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVALDTMKNIHPIYNIKSLMIKRELA 229
Query: 413 KDPRLKNESWDRFLPTFKSKNV-XXXXXXXXXXXXXXXXXXXXXPESKIDKELATGEYFL 237
KD L+++SW+RFLP FK KNV PES+IDKELA+GEYFL
Sbjct: 230 KDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFL 289
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEK-IEKP 111
K +QKK + + KQA+A R E+R K FIPP+EK I KP
Sbjct: 290 KANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKP 332
>BC033887-1|AAH33887.1| 381|Homo sapiens KRR1, small subunit (SSU)
processome component, homolog (yeast) protein.
Length = 381
Score = 268 bits (658), Expect = 1e-71
Identities = 134/223 (60%), Positives = 164/223 (73%), Gaps = 2/223 (0%)
Frame = -3
Query: 773 PYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQG 594
PYIII+ARD +KLL+RSV FEQA R+L D++ CDIIKI S VR KE F+KRRQRLIGP+G
Sbjct: 110 PYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKG 169
Query: 593 VTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIKSLMIKRELM 414
TLK++ELLT CY++VQGNTVSA+GP+ GL +VR++V DTMKNIHP+YNIKSLMIKREL
Sbjct: 170 STLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELA 229
Query: 413 KDPRLKNESWDRFLPTFKSKNVXXXXXXXXXXXXXXXXXXXXXPE-SKIDKELATGEYFL 237
KD L+++SW+RFLP FK KNV S+IDKELA+GEYFL
Sbjct: 230 KDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPGSQIDKELASGEYFL 289
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEK-IEKP 111
K +QKK + + KQA+A R E+R K FIPP+EK I KP
Sbjct: 290 KANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKP 332
>U55766-1|AAB00557.1| 288|Homo sapiens Rev interacting protein
Rip-1 protein.
Length = 288
Score = 224 bits (547), Expect = 3e-58
Identities = 101/142 (71%), Positives = 123/142 (86%)
Frame = -3
Query: 773 PYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQG 594
PYIII+ARD +KLL+RSV FEQA R+L D++ CDIIKI S VR KE F+KRRQRLIGP+G
Sbjct: 110 PYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKG 169
Query: 593 VTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIKSLMIKRELM 414
TLK++ELLT CY++VQGNTVSA+GP+ GL +VR++V DTMKNIHP+YNIKSLMIKREL
Sbjct: 170 STLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELA 229
Query: 413 KDPRLKNESWDRFLPTFKSKNV 348
KD L+++SW+RFLP FK KNV
Sbjct: 230 KDSELRSQSWERFLPQFKHKNV 251
Score = 33.5 bits (73), Expect = 0.92
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 331 RRKPIKNLILHSHLHNLKVKLIRSWPQGNT 242
++K +K I HSH HN KV+ I++W NT
Sbjct: 258 KKKTVKKDIRHSHHHNQKVRSIKNWLVVNT 287
>EF010919-1|ABJ97679.1| 324|Homo sapiens HRB2 variant B protein.
Length = 324
Score = 173 bits (422), Expect = 5e-43
Identities = 77/111 (69%), Positives = 96/111 (86%)
Frame = -3
Query: 773 PYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQG 594
PYIII+ARD +KLL+RSV FEQA R+L D++ CDIIKI S VR KE F+KR QRL+GP+G
Sbjct: 110 PYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRGQRLVGPKG 169
Query: 593 VTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIK 441
TLK++ELLT CY++VQGNTVSA+GP+ GL +VR++V DTMKNIHP+YNIK
Sbjct: 170 STLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIK 220
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/56 (58%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = -3
Query: 275 KIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEK-IEKP 111
KIDKELA+GEYFLK +QKK + + KQA+A R E+R K FIPP+EK I KP
Sbjct: 220 KIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKP 275
>BC000048-1|AAH00048.1| 304|Homo sapiens DnaJ (Hsp40) homolog,
subfamily C, member 17 protein.
Length = 304
Score = 33.5 bits (73), Expect = 0.92
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -3
Query: 275 KIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
K K+ A L E +KK K+ E +E+QAQA+ +E+ + +++IE+
Sbjct: 77 KAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRSTRTLEQEIER 130
>AK001496-1|BAA91724.1| 304|Homo sapiens protein ( Homo sapiens
cDNA FLJ10634 fis, clone NT2RP2005654, weakly similar to
CYSTEINE STRING PROTEIN. ).
Length = 304
Score = 33.5 bits (73), Expect = 0.92
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -3
Query: 275 KIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
K K+ A L E +KK K+ E +E+QAQA+ +E+ + +++IE+
Sbjct: 77 KAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRSTRTLEQEIER 130
>BC039263-1|AAH39263.1| 609|Homo sapiens GRID1 protein protein.
Length = 609
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 722 VPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGP--QGVTLKSIELLTECYVL 549
V FE + G D+ K+ ++ +K ++R +G QG+TLK + +L E +V+
Sbjct: 392 VQFEILGTTYSETFGKDMRKLATWDSEKGLNGSLQERPMGSRLQGLTLKVVTVLEEPFVM 451
Query: 548 VQGNTVSAVGPYKG 507
V N + YKG
Sbjct: 452 VAENILGQPKRYKG 465
>AL683834-1|CAI39587.1| 791|Homo sapiens glutamate receptor,
ionotropic, delta 1 protein.
Length = 791
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 722 VPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGP--QGVTLKSIELLTECYVL 549
V FE + G D+ K+ ++ +K ++R +G QG+TLK + +L E +V+
Sbjct: 174 VQFEILGTTYSETFGKDMRKLATWDSEKGLNGSLQERPMGSRLQGLTLKVVTVLEEPFVM 233
Query: 548 VQGNTVSAVGPYKG 507
V N + YKG
Sbjct: 234 VAENILGQPKRYKG 247
>AL596135-1|CAI39475.1| 791|Homo sapiens glutamate receptor,
ionotropic, delta 1 protein.
Length = 791
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 722 VPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGP--QGVTLKSIELLTECYVL 549
V FE + G D+ K+ ++ +K ++R +G QG+TLK + +L E +V+
Sbjct: 174 VQFEILGTTYSETFGKDMRKLATWDSEKGLNGSLQERPMGSRLQGLTLKVVTVLEEPFVM 233
Query: 548 VQGNTVSAVGPYKG 507
V N + YKG
Sbjct: 234 VAENILGQPKRYKG 247
>AB033046-1|BAA86534.1| 791|Homo sapiens KIAA1220 protein protein.
Length = 791
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 722 VPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGP--QGVTLKSIELLTECYVL 549
V FE + G D+ K+ ++ +K ++R +G QG+TLK + +L E +V+
Sbjct: 174 VQFEILGTTYSETFGKDMRKLATWDSEKGLNGSLQERPMGSRLQGLTLKVVTVLEEPFVM 233
Query: 548 VQGNTVSAVGPYKG 507
V N + YKG
Sbjct: 234 VAENILGQPKRYKG 247
>DQ323998-1|ABC88600.1| 333|Homo sapiens QKI protein.
Length = 333
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>BC019917-1|AAH19917.1| 341|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 341
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>BC012222-1|AAH12222.1| 293|Homo sapiens QKI protein protein.
Length = 293
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 53 RILGPRGLTAKQLEAETGCKIMVRG 77
>AY780788-1|AAV98358.1| 313|Homo sapiens quaking isoform protein.
Length = 313
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 97 RILGPRGLTAKQLEAETGCKIMVRG 121
>AL356119-3|CAI23024.1| 325|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 325
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AL356119-2|CAI23023.1| 319|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 319
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AL356119-1|CAI23022.1| 341|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 341
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AL031781-3|CAI21653.1| 325|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 325
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AL031781-2|CAI21652.1| 319|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 319
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AL031781-1|CAI21651.1| 341|Homo sapiens quaking homolog, KH domain
RNA binding (mouse) protein.
Length = 341
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AK027309-1|BAB55032.1| 323|Homo sapiens protein ( Homo sapiens
cDNA FLJ14403 fis, clone HEMBA1003805, highly similar to
Mus musculus KH domain RNA binding protein QKI-5A mRNA.
).
Length = 323
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 83 RILGPRGLTAKQLEAETGCKIMVRG 107
>AF142422-1|AAF63417.1| 341|Homo sapiens QUAKING isoform 3 protein.
Length = 341
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 123 RILGPRGLTAKQLEAETGCKIMVRG 147
>AF142421-1|AAF63416.1| 337|Homo sapiens QUAKING isoform 5 protein.
Length = 337
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 97 RILGPRGLTAKQLEAETGCKIMVRG 121
>AF142420-1|AAF63415.1| 315|Homo sapiens QUAKING isoform 4 protein.
Length = 315
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 97 RILGPRGLTAKQLEAETGCKIMVRG 121
>AF142419-1|AAF63414.1| 363|Homo sapiens QUAKING isoform 6 protein.
Length = 363
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 123 RILGPRGLTAKQLEAETGCKIMVRG 147
>AF142418-1|AAF63413.1| 347|Homo sapiens QUAKING isoform 2 protein.
Length = 347
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 123 RILGPRGLTAKQLEAETGCKIMVRG 147
>AF142417-1|AAF63412.1| 321|Homo sapiens QUAKING isoform 1 protein.
Length = 321
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 97 RILGPRGLTAKQLEAETGCKIMVRG 121
>AB067808-1|BAB69681.1| 325|Homo sapiens RNA binding protein HQK
protein.
Length = 325
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AB067801-1|BAB69499.1| 319|Homo sapiens RNA binding protein HQK-7B
protein.
Length = 319
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AB067800-1|BAB69498.1| 325|Homo sapiens RNA binding protein HQK-7
protein.
Length = 325
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AB067799-1|BAB69497.1| 319|Homo sapiens RNA binding protein HQK-6
protein.
Length = 319
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AB067798-1|BAB69496.1| 341|Homo sapiens RNA binding protein HQK-5
protein.
Length = 341
Score = 31.5 bits (68), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 101 RILGPRGLTAKQLEAETGCKIMVRG 125
>AK092214-1|BAC03831.1| 194|Homo sapiens protein ( Homo sapiens
cDNA FLJ34895 fis, clone NT2NE2018176. ).
Length = 194
Score = 27.1 bits (57), Expect(2) = 5.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 266 KELATGEYFLKE-DQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEKP 111
+E E+F+ D ++ + H K+ Q V E+ Q IPP+ ++EKP
Sbjct: 126 QEKLASEFFVDGLDSDESTLEHFKRWLQPDKVAVSTEEVQY-LIPPESQVEKP 177
Score = 22.6 bits (46), Expect(2) = 5.3
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 527 AVGPYKGLVQVRRIVEDTMKNIHPMYNIKSLMIKRELMKD-PRLKNESWDRFL 372
AV P+ L + K + + + + +++++ + K E WDRFL
Sbjct: 73 AVKPWAPLQDSEVYLASLEKKLRRIKGLNQEVTSKDMLRTLAQAKKECWDRFL 125
>AL832032-1|CAD89911.1| 193|Homo sapiens hypothetical protein
protein.
Length = 193
Score = 27.1 bits (57), Expect(2) = 5.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 266 KELATGEYFLKE-DQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEKP 111
+E E+F+ D ++ + H K+ Q V E+ Q IPP+ ++EKP
Sbjct: 125 QEKLASEFFVDGLDSDESTLEHFKRWLQPDKVAVSTEEVQY-LIPPESQVEKP 176
Score = 22.6 bits (46), Expect(2) = 5.3
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 527 AVGPYKGLVQVRRIVEDTMKNIHPMYNIKSLMIKRELMKD-PRLKNESWDRFL 372
AV P+ L + K + + + + +++++ + K E WDRFL
Sbjct: 72 AVKPWAPLQDSEVYLASLEKKLRRIKGLNQEVTSKDMLRTLAQAKKECWDRFL 124
>BC001673-1|AAH01673.2| 185|Homo sapiens CCDC32 protein protein.
Length = 185
Score = 27.1 bits (57), Expect(2) = 5.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 266 KELATGEYFLKE-DQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEKP 111
+E E+F+ D ++ + H K+ Q V E+ Q IPP+ ++EKP
Sbjct: 117 QEKLASEFFVDGLDSDESTLEHFKRWLQPDKVAVSTEEVQY-LIPPESQVEKP 168
Score = 22.6 bits (46), Expect(2) = 5.4
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 527 AVGPYKGLVQVRRIVEDTMKNIHPMYNIKSLMIKRELMKD-PRLKNESWDRFL 372
AV P+ L + K + + + + +++++ + K E WDRFL
Sbjct: 64 AVKPWAPLQDSEVYLASLEKKLRRIKGLNQEVTSKDMLRTLAQAKKECWDRFL 116
>BC094702-1|AAH94702.1| 627|Homo sapiens MAP1A protein protein.
Length = 627
Score = 30.7 bits (66), Expect = 6.5
Identities = 16/56 (28%), Positives = 35/56 (62%)
Frame = -3
Query: 278 SKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEKP 111
SK++++ + +K+++K+ K ++E++ AK+ E+++KD P +KI KP
Sbjct: 410 SKLEEKKDKEKKEIKKERKELKKDEGRKEEKKDAKK---EEKRKDTKPELKKISKP 462
>BC068565-1|AAH68565.1| 644|Homo sapiens SULF1 protein protein.
Length = 644
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = -3
Query: 740 KLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQR 612
KL S PF++A++ +D ++ + K N+ RKKE KRRQR
Sbjct: 453 KLKSHLHPFKEAAQEVDSKL--QLFKENNRRRKKERKEKRRQR 493
>BC016029-1|AAH16029.1| 639|Homo sapiens CTTNBP2 N-terminal like
protein.
Length = 639
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHE-------KQEKQAQAKRVRDEQRQKDFIPPQEK 123
E++++K+L+ E+ ++ +Q +AK++ E K+E ++ K V+D + P E+
Sbjct: 232 EAQVEKQLS--EFDIEREQLRAKLNREENRTKTLKEEMESLKKIVKDLEASHQHSSPNEQ 289
Query: 122 IEKP 111
++KP
Sbjct: 290 LKKP 293
>AY101175-1|AAM76860.1| 871|Homo sapiens extracellular sulfatase
SULF-1 protein.
Length = 871
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = -3
Query: 740 KLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQR 612
KL S PF++A++ +D ++ + K N+ RKKE KRRQR
Sbjct: 694 KLKSHLHPFKEAAQEVDSKL--QLFKENNRRRKKERKEKRRQR 734
>AL354760-2|CAI22308.1| 639|Homo sapiens novel protein protein.
Length = 639
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHE-------KQEKQAQAKRVRDEQRQKDFIPPQEK 123
E++++K+L+ E+ ++ +Q +AK++ E K+E ++ K V+D + P E+
Sbjct: 232 EAQVEKQLS--EFDIEREQLRAKLNREENRTKTLKEEMESLKKIVKDLEASHQHSSPNEQ 289
Query: 122 IEKP 111
++KP
Sbjct: 290 LKKP 293
>AK074873-1|BAC11258.1| 540|Homo sapiens protein ( Homo sapiens
cDNA FLJ90392 fis, clone NT2RP2005541, weakly similar to
N-ACETYLGLUCOSAMINE-6-SULFATASE PRECURSOR (EC 3.1.6.14).
).
Length = 540
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = -3
Query: 740 KLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQR 612
KL S PF++A++ +D ++ + K N+ RKKE KRRQR
Sbjct: 363 KLKSHLHPFKEAAQEVDSKL--QLFKENNRRRKKERREKRRQR 403
>AF545571-1|AAO33315.1| 871|Homo sapiens sulfatase SULF1 precursor
protein.
Length = 871
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = -3
Query: 740 KLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQR 612
KL S PF++A++ +D ++ + K N+ RKKE KRRQR
Sbjct: 694 KLKSHLHPFKEAAQEVDSKL--QLFKENNRRRKKERKEKRRQR 734
>AF200415-1|AAF08305.2| 1825|Homo sapiens proliferation-related
protein P80 protein.
Length = 1825
Score = 30.7 bits (66), Expect = 6.5
Identities = 16/56 (28%), Positives = 35/56 (62%)
Frame = -3
Query: 278 SKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEKP 111
SK++++ + +K+++K+ K ++E++ AK+ E+++KD P +KI KP
Sbjct: 410 SKLEEKKDKEKKEIKKERKELKKDEGRKEEKKDAKK---EEKRKDTKPELKKISKP 462
>AF095910-1|AAF03480.1| 378|Homo sapiens microtubule-associated
protein 1A like protein protein.
Length = 378
Score = 30.7 bits (66), Expect = 6.5
Identities = 16/56 (28%), Positives = 35/56 (62%)
Frame = -3
Query: 278 SKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEKP 111
SK++++ + +K+++K+ K ++E++ AK+ E+++KD P +KI KP
Sbjct: 119 SKLEEKKDKEKKEIKKERKELKKDEGRKEEKKDAKK---EEKRKDTKPELKKISKP 171
>AB037854-1|BAA92671.1| 652|Homo sapiens KIAA1433 protein protein.
Length = 652
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHE-------KQEKQAQAKRVRDEQRQKDFIPPQEK 123
E++++K+L+ E+ ++ +Q +AK++ E K+E ++ K V+D + P E+
Sbjct: 245 EAQVEKQLS--EFDIEREQLRAKLNREENRTKTLKEEMESLKKIVKDLEASHQHSSPNEQ 302
Query: 122 IEKP 111
++KP
Sbjct: 303 LKKP 306
>AB029000-1|BAA83029.1| 818|Homo sapiens KIAA1077 protein protein.
Length = 818
Score = 30.7 bits (66), Expect = 6.5
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = -3
Query: 740 KLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQR 612
KL S PF++A++ +D ++ + K N+ RKKE KRRQR
Sbjct: 641 KLKSHLHPFKEAAQEVDSKL--QLFKENNRRRKKERKEKRRQR 681
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,492,063
Number of Sequences: 237096
Number of extensions: 1633175
Number of successful extensions: 4752
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 4209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4695
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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