Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m23
(811 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016430-3|AAB65369.1| 370|Caenorhabditis elegans Hypothetical ... 214 7e-56
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 33 0.24
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 33 0.32
Z72512-7|CAA96668.3| 568|Caenorhabditis elegans Hypothetical pr... 31 0.98
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 31 0.98
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 31 0.98
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 31 0.98
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 31 0.98
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 31 0.98
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 31 0.98
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z46937-7|CAH10806.1| 109|Caenorhabditis elegans Hypothetical pr... 31 1.3
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 31 1.3
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 31 1.3
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 31 1.3
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 31 1.3
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 30 1.7
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 30 1.7
U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 30 1.7
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 30 1.7
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 30 1.7
Z68300-1|CAA92617.1| 185|Caenorhabditis elegans Hypothetical pr... 30 2.3
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 30 2.3
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 30 2.3
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 30 2.3
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 30 2.3
Z27079-1|CAA81593.2| 411|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF045644-1|AAC02601.1| 543|Caenorhabditis elegans Hypothetical ... 29 3.0
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 29 3.0
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 29 3.9
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 29 3.9
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 29 3.9
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 3.9
U88172-4|AAB42259.1| 224|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 3.9
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 3.9
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 29 5.2
AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical ... 29 5.2
AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical ... 29 5.2
U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin fam... 28 6.9
U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin fam... 28 6.9
U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin iso... 28 6.9
AF045641-4|AAO91715.1| 332|Caenorhabditis elegans Hypothetical ... 28 6.9
AF045641-3|AAO91716.1| 368|Caenorhabditis elegans Hypothetical ... 28 6.9
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 28 6.9
AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical ... 28 6.9
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 28 6.9
Z81048-4|CAB02844.1| 219|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z75543-9|CAA99869.1| 194|Caenorhabditis elegans Hypothetical pr... 28 9.1
U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical pr... 28 9.1
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 28 9.1
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 28 9.1
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 28 9.1
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 28 9.1
>AF016430-3|AAB65369.1| 370|Caenorhabditis elegans Hypothetical
protein C05C8.2 protein.
Length = 370
Score = 214 bits (522), Expect = 7e-56
Identities = 108/217 (49%), Positives = 149/217 (68%), Gaps = 8/217 (3%)
Frame = -3
Query: 773 PYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQG 594
PYII+KAR+ +KLLSRSVP+EQA RVL+DEI C+IIKI+S VR KE F+KRR RLIG G
Sbjct: 115 PYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVKRRARLIGNDG 174
Query: 593 VTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIKSLMIKRELM 414
TLK++ELLT+CYV VQG TV AVGP GL Q+ +IV D MKNIHP+YNIK++MIKREL
Sbjct: 175 ATLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQIVTDCMKNIHPIYNIKTMMIKRELS 234
Query: 413 KDPRLKNESWDRFLPTFK--------SKNVXXXXXXXXXXXXXXXXXXXXXPESKIDKEL 258
K+ LK+ +WD +LP ++ +K SKIDK++
Sbjct: 235 KNDELKDANWDAYLPNYRKKVQSATTTKEAKKKKAYKMKPKKEFTPFPPAPVMSKIDKQI 294
Query: 257 ATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQK 147
+GEYF++E+++ K++ ++ + +A A + ++Q+QK
Sbjct: 295 ESGEYFIRENER--KMNKKRAKLEASAVKTVEKQKQK 329
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 33.1 bits (72), Expect = 0.24
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQGN 537
R+IGP+G T K +E T C ++++GN
Sbjct: 140 RIIGPRGTTAKQLEKDTGCRIMIRGN 165
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 32.7 bits (71), Expect = 0.32
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQGNT 534
RL+GP+G T K +E+ T C + + G T
Sbjct: 131 RLLGPRGTTAKQLEVTTGCRITILGRT 157
>Z72512-7|CAA96668.3| 568|Caenorhabditis elegans Hypothetical
protein R07B5.8a protein.
Length = 568
Score = 31.1 bits (67), Expect = 0.98
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -1
Query: 397 KMKVGIDFCQHLRARMCQGSNQRRKPIKNLILHSHLHNLKVKLIRSWPQGNTSLRKI-KR 221
KM+ +D L + QRRK I+ +H + S P G S++K+ KR
Sbjct: 496 KMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSMEKATPTSTTSLPVG--SVKKVRKR 553
Query: 220 RQRFTMKN-KRN 188
R +F MK+ KRN
Sbjct: 554 RFQFGMKHRKRN 565
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/33 (42%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -3
Query: 239 LKEDQKKAKIHHEKQEKQ-AQAKRVRDEQRQKD 144
LKE Q + K+ E++E++ A+ KR+ +E+RQK+
Sbjct: 87 LKEKQAQRKLAREQEEREAAERKRLDEERRQKE 119
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/33 (42%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -3
Query: 239 LKEDQKKAKIHHEKQEKQ-AQAKRVRDEQRQKD 144
LKE Q + K+ E++E++ A+ KR+ +E+RQK+
Sbjct: 87 LKEKQAQRKLAREQEEREAAERKRLDEERRQKE 119
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 31.1 bits (67), Expect = 0.98
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 107 RILGPRGMTAKQLEQETGCKIMVRG 131
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.98
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 149 RILGPRGMTAKQLEQETGCKIMVRG 173
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 31.1 bits (67), Expect = 0.98
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 107 RILGPRGMTAKQLEQETGCKIMVRG 131
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 31.1 bits (67), Expect = 0.98
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T+K +E T C + V+G
Sbjct: 90 RILGPRGMTVKQLEKETGCRIFVRG 114
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 224 RILGPRGMTAKQLEQDTGCKIMVRG 248
>Z46937-7|CAH10806.1| 109|Caenorhabditis elegans Hypothetical
protein F43C1.7 protein.
Length = 109
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -3
Query: 602 PQGVTLKSI--ELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPM 453
P G+T+ +I ELL EC LV+ N++ V K V+V +++ +K + M
Sbjct: 54 PSGITIDTIPEELLEECCQLVKKNSIQGVKMEK--VEVNYTLKENLKKVKGM 103
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQG 540
R++GP+G+T K +E T C ++V+G
Sbjct: 224 RILGPRGMTAKQLEQDTGCKIMVRG 248
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = -3
Query: 614 RLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIKS 438
RLIGP+G+T++ +E C + ++G + + ++ R E + IH M +++S
Sbjct: 133 RLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRERVGWEHLKEPIHVMISVRS 191
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -3
Query: 281 ESKIDKELATGEYF---LKEDQK---KAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKI 120
E ++DKE E L+ED+K K K EK++K + K +DE+R K +EK
Sbjct: 127 EKRLDKEKKEKERLDKKLEEDKKKEEKRKEAEEKKKKDEEEKMKKDEERNKRKKEEEEKK 186
Query: 119 E 117
E
Sbjct: 187 E 187
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/52 (30%), Positives = 33/52 (63%)
Frame = -3
Query: 269 DKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
+K+ E +K+D+++ K E++EK+ +AKR DE++++ +E IE+
Sbjct: 159 EKKKKDEEEKMKKDEERNKRKKEEEEKK-EAKRREDEEKKEAKRKEEEAIEE 209
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
E K + + G+ K+++KK + EK++K+ + K + E +KD ++K EK
Sbjct: 70 EKKEKSKKSEGKKSDKKEEKKEEKKEEKEDKKEEKKEEKKEDDKKDEKKDEKKDEK 125
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
K+D K+ K +K+EK+ + K + E+++++ ++K EK
Sbjct: 169 KKDDKEEKKEEKKEEKKEEKKEEKKEEKKEEEKKEEKKEEK 209
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/41 (26%), Positives = 27/41 (65%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
K+D+KK + +K+EK+ + K + E+++++ +++ EK
Sbjct: 161 KDDEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEKKEEEK 201
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/56 (23%), Positives = 36/56 (64%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
E K+ K+ E ++D++K K +++EK+ + ++ +D++++++ +EKI++
Sbjct: 355 EEKVVKKNKEKEREKEKDKEKEKEKDKEKEKEKEKEKEKDKEKEREKRKSKEKIKE 410
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/56 (26%), Positives = 32/56 (57%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
E + +E+ E K+D++ K +K+E+Q + ++E+ +KD P +E+ +K
Sbjct: 296 EEEKKEEVEKKEEDEKKDEEPKKEEEKKEEEQKEEVEKKEEEEKKDEEPKKEEEKK 351
>U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein
3, isoform c protein.
Length = 279
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/43 (30%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -3
Query: 239 LKEDQKKAKIHHEKQEKQ-AQAKRVRDEQRQKDFIPPQEKIEK 114
LKE Q+K K+ E++EK+ + +R D++R+++ + K+++
Sbjct: 93 LKEKQEKRKLEREQEEKEMEERRRAADDRRRQEEEERKAKVDQ 135
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/43 (30%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -3
Query: 239 LKEDQKKAKIHHEKQEKQ-AQAKRVRDEQRQKDFIPPQEKIEK 114
LKE Q+K K+ E++EK+ + +R D++R+++ + K+++
Sbjct: 927 LKEKQEKRKLEREQEEKEMEERRRAADDRRRQEEEERKAKVDQ 969
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/43 (30%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -3
Query: 239 LKEDQKKAKIHHEKQEKQ-AQAKRVRDEQRQKDFIPPQEKIEK 114
LKE Q+K K+ E++EK+ + +R D++R+++ + K+++
Sbjct: 93 LKEKQEKRKLEREQEEKEMEERRRAADDRRRQEEEERKAKVDQ 135
>Z68300-1|CAA92617.1| 185|Caenorhabditis elegans Hypothetical
protein T22B3.3 protein.
Length = 185
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKD 144
KE++K+ K + EK+EK+ K + E++++D
Sbjct: 151 KEEKKEEKKNEEKEEKKEDKKEEKKEEKEED 181
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKD 144
E+K D + ED+ K K EK+EK+ + K E++++D
Sbjct: 124 ETKPDGVIRLQAVLENEDEDKEKKEEEKEEKKEEKKNEEKEEKKED 169
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -3
Query: 239 LKEDQKKAKIHHEKQEKQ-AQAKRVRDEQRQKD 144
LKE Q+K + E+ E+Q A+ +R DE+R+K+
Sbjct: 103 LKEKQEKRRAEREEDERQFAERRRQDDERRRKE 135
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -3
Query: 239 LKEDQKKAKIHHEKQEKQ-AQAKRVRDEQRQKD 144
LKE Q+K + E+ E+Q A+ +R DE+R+K+
Sbjct: 103 LKEKQEKRRAEREEDERQFAERRRQDDERRRKE 135
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 239 LKEDQKKAKIHHEKQEKQAQAKRVRDEQRQK 147
LKE Q+K + E+ E+Q +R +DE+R++
Sbjct: 8 LKEKQEKRRAEREEDERQFAERRRQDEERRR 38
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 239 LKEDQKKAKIHHEKQEKQAQAKRVRDEQRQK 147
LKE Q+K + E+ E+Q +R +DE+R++
Sbjct: 112 LKEKQEKRRAEREEDERQFAERRRQDEERRR 142
>Z27079-1|CAA81593.2| 411|Caenorhabditis elegans Hypothetical
protein T05G5.1 protein.
Length = 411
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -3
Query: 248 EYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
E + KE+ + + + E++ Q +RVRD++R++ + +IE+
Sbjct: 142 EQYWKEETARREQQRAEAERRIQEQRVRDDERRRQHEAERSQIEE 186
>AF045644-1|AAC02601.1| 543|Caenorhabditis elegans Hypothetical
protein F57H12.5 protein.
Length = 543
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 239 LKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKD 144
LKE ++K K EK+E+Q K R E +++D
Sbjct: 119 LKEKKEKEKKDEEKRERQEDRKEERKENKRED 150
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKI 120
K+ +KK K +K K+ + +R R EQR+K+ + KI
Sbjct: 306 KKKEKKEKKKSKKANKEKEERRARREQRKKERAELKRKI 344
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
protein F48F5.1 protein.
Length = 1291
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKI 120
KE + K + EK E + A++ +DEQ QK+ Q K+
Sbjct: 872 KEKEAKLRADQEKSEARKVAEKKKDEQNQKEKDKLQAKL 910
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
KE ++ ++ E+QE++ + K+ RDE R+K+ ++K EK
Sbjct: 806 KEMERAKRLEDERQERKREKKKERDE-RKKEKEKVRKKAEK 845
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
KE ++ ++ E+QE++ + K+ RDE R+K+ ++K EK
Sbjct: 1097 KEMERAKRLEDERQERKREKKKERDE-RKKEKEKVRKKAEK 1136
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
KE ++ ++ E+QE++ + K+ RDE R+K+ ++K EK
Sbjct: 1112 KEMERAKRLEDERQERKREKKKERDE-RKKEKEKVRKKAEK 1151
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
KE ++ ++ E+QE++ + K+ RDE R+K+ ++K EK
Sbjct: 1112 KEMERAKRLEDERQERKREKKKERDE-RKKEKEKVRKKAEK 1151
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
KE ++ ++ E+QE++ + K+ RDE R+K+ ++K EK
Sbjct: 806 KEMERAKRLEDERQERKREKKKERDE-RKKEKEKVRKKAEK 845
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
KE ++ ++ E+QE++ + K+ RDE R+K+ ++K EK
Sbjct: 1097 KEMERAKRLEDERQERKREKKKERDE-RKKEKEKVRKKAEK 1136
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
KE ++ ++ E+QE++ + K+ RDE R+K+ ++K EK
Sbjct: 1112 KEMERAKRLEDERQERKREKKKERDE-RKKEKEKVRKKAEK 1151
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
KE ++ ++ E+QE++ + K+ RDE R+K+ ++K EK
Sbjct: 1112 KEMERAKRLEDERQERKREKKKERDE-RKKEKEKVRKKAEK 1151
>U88172-4|AAB42259.1| 224|Caenorhabditis elegans Hypothetical
protein ZK354.7 protein.
Length = 224
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/31 (32%), Positives = 23/31 (74%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKD 144
K+D+K+AK +K+EK+ + K + E+++++
Sbjct: 162 KDDKKEAKKEEKKEEKKEEKKEEKKEEKKEE 192
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 611 LIGPQGVTLKSIELLTECYVLVQG 540
LIGP+G TLKS+E T ++++G
Sbjct: 323 LIGPRGNTLKSLEAETGAKIIIRG 346
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 611 LIGPQGVTLKSIELLTECYVLVQG 540
LIGP+G TLKS+E T ++++G
Sbjct: 323 LIGPRGNTLKSLEAETGAKIIIRG 346
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = -3
Query: 248 EYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEK 123
E + +DQ+ ++H +++ Q K V+ + D++ P+ K
Sbjct: 208 EELIVKDQRSLEVHQDQENTQKVLKEVKQLSDRLDYLTPKRK 249
>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEK--QAQAKRVRDEQRQKDFIPPQEKIEK 114
KE +++AK + E+QEK QA+ +R + +RQ+ +E+ EK
Sbjct: 327 KEREEEAKKNRERQEKERQAEVERQAELERQRIIEAQREEEEK 369
>AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical
protein C17F3.3 protein.
Length = 253
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRD--EQRQKDFIPPQEKIEK 114
KED+KK + + ++++ + V+D E +KD P EK EK
Sbjct: 124 KEDEKKEESKEKSKDEEKKKDEVKDKKEDEKKDDKKPGEKEEK 166
>AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical
protein F49H12.5 protein.
Length = 257
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 263 ELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
E T E K + K K +K+E + + K+V ++ +KD ++K EK
Sbjct: 155 EFGTDEEPAKGEVKSEKKEEKKEEAKKEEKKVEKKEEKKDKKKDEKKEEK 204
>U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin family
protein 8, isoformb protein.
Length = 447
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 254 TGEYFLKEDQKKAKIH-HEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
T ++ +E+ KK + H+K++++ + ++ R QR+K+ ++EK
Sbjct: 319 TPPHWKREESKKLTLEAHQKRQEELEERQKRAAQREKEEAERNARLEK 366
>U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin family
protein 8, isoforma protein.
Length = 466
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 254 TGEYFLKEDQKKAKIH-HEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
T ++ +E+ KK + H+K++++ + ++ R QR+K+ ++EK
Sbjct: 338 TPPHWKREESKKLTLEAHQKRQEELEERQKRAAQREKEEAERNARLEK 385
>U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin
isoform 8 protein.
Length = 466
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 254 TGEYFLKEDQKKAKIH-HEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
T ++ +E+ KK + H+K++++ + ++ R QR+K+ ++EK
Sbjct: 338 TPPHWKREESKKLTLEAHQKRQEELEERQKRAAQREKEEAERNARLEK 385
>AF045641-4|AAO91715.1| 332|Caenorhabditis elegans Hypothetical
protein F53H1.4b protein.
Length = 332
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/41 (26%), Positives = 29/41 (70%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
K++++K K+ +KQ++Q + K+ ++E++ K +EK+++
Sbjct: 207 KDEKEKEKLE-KKQKEQEEKKQKKEEEKAKKLKEKEEKLKE 246
>AF045641-3|AAO91716.1| 368|Caenorhabditis elegans Hypothetical
protein F53H1.4c protein.
Length = 368
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/41 (26%), Positives = 29/41 (70%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
K++++K K+ +KQ++Q + K+ ++E++ K +EK+++
Sbjct: 243 KDEKEKEKLE-KKQKEQEEKKQKKEEEKAKKLKEKEEKLKE 282
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/41 (26%), Positives = 29/41 (70%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
K++++K K+ +KQ++Q + K+ ++E++ K +EK+++
Sbjct: 243 KDEKEKEKLE-KKQKEQEEKKQKKEEEKAKKLKEKEEKLKE 282
>AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical
protein Y61A9LA.8 protein.
Length = 740
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = -3
Query: 236 KEDQKKAKIHHEKQEKQAQAKRVRDEQRQKD 144
KE ++K + E+ EK+ Q ++ R+++RQ++
Sbjct: 106 KEHEEKRRKEKEEHEKELQKEKEREKERQRE 136
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -3
Query: 239 LKEDQKKAKIHHE--KQEKQAQAKRVRDEQRQKDFIPPQEKIE 117
+KE++K+ K+HHE +E AQ +D+ +K QE+I+
Sbjct: 4049 VKEEKKEDKLHHELFVEECVAQESITQDDVERKPLELTQEEID 4091
>Z81048-4|CAB02844.1| 219|Caenorhabditis elegans Hypothetical
protein C41G7.6 protein.
Length = 219
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKD 144
+ K DK+ + K+D+K+AK +K +K ++K+ + E++ +D
Sbjct: 151 DKKGDKKDEKKDDEKKDDKKEAKSKSKKSKKSKKSKKSKREKKDED 196
>Z75543-9|CAA99869.1| 194|Caenorhabditis elegans Hypothetical
protein K01D12.10 protein.
Length = 194
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVRDEQRQKD 144
E+ +D+E+ G+ KE+++ K EK+E++ K + E+++K+
Sbjct: 79 EALVDQEVLEGKQEEKEEEEVEK-KEEKEEEEVGKKEEKVEKKEKE 123
>U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical
protein T23B3.5 protein.
Length = 211
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKK-AKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
E K D+E G+ KED KK K +K++++ A +DE++ KD ++K EK
Sbjct: 89 EEKKDEEKKDGDK--KEDDKKDEKKDEDKKDEKKDADEKKDEEK-KDDKKDEKKDEK 142
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 275 KIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVR 165
K++++++ +E ++K KIHH K+ + KR R
Sbjct: 45 KLEEDISARGLSDEEKEEKRKIHHSKETDYLRLKRTR 81
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 275 KIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVR 165
K++++++ +E ++K KIHH K+ + KR R
Sbjct: 45 KLEEDISARGLSDEEKEEKRKIHHSKETDYLRLKRTR 81
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 275 KIDKELATGEYFLKEDQKKAKIHHEKQEKQAQAKRVR 165
K++++++ +E ++K KIHH K+ + KR R
Sbjct: 38 KLEEDISARGLSDEEKEEKRKIHHSKETDYLRLKRTR 74
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -3
Query: 281 ESKIDKELATGEYFLKEDQKK-AKIHHEKQEKQAQAKRVRDEQRQKDFIPPQEKIEK 114
E K D+E G+ KED KK K +K++++ A +DE++ KD ++K EK
Sbjct: 89 EEKKDEEKKDGDK--KEDDKKDEKKDEDKKDEKKDADEKKDEEK-KDDKKDEKKDEK 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,361
Number of Sequences: 27780
Number of extensions: 272804
Number of successful extensions: 1337
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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