Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m21
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   170   1e-43
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   170   1e-43
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    28   0.86 
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    26   3.5  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    26   4.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   4.6  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    26   4.6  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   6.1  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   6.1  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.0  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   8.0  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  170 bits (413), Expect = 1e-43
 Identities = 82/150 (54%), Positives = 105/150 (70%), Gaps = 1/150 (0%)
 Frame = -1

Query: 514 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 335
           L+EY+V+GRK+P+E+EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV    
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 334 XXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 155
                    K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122

Query: 154 IK-VEVIKAAACRRPQVKQFHNSTIRFPLP 68
           +K VEV K    RR  VKQ  N  ++FPLP
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLP 152


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  170 bits (413), Expect = 1e-43
 Identities = 82/150 (54%), Positives = 105/150 (70%), Gaps = 1/150 (0%)
 Frame = -1

Query: 514 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 335
           L+EY+V+GRK+P+E+EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV    
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 334 XXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 155
                    K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122

Query: 154 IK-VEVIKAAACRRPQVKQFHNSTIRFPLP 68
           +K VEV K    RR  VKQ  N  ++FPLP
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLP 152


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -2

Query: 507 NMRLSAVSSRRRTSPNLPCIK*EFSLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQ 328
           N+ + +V    R S     I    S ++   P++V   S D+ + SRRP +  S  RKF 
Sbjct: 271 NITVESVRGFLRDSSKPDNIMDSPSPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFS 330

Query: 327 RK---APSRLRILVSGYAMSL 274
            K    PS  + L  G   SL
Sbjct: 331 PKLTRTPSLTKSLDPGTPTSL 351


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 429 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 301
           ++ + PN +S IS  N R + R LVK  L+ +      SR RI
Sbjct: 21  KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 429 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 301
           ++ + PN +S IS  N R + R L+K  L+ +      SR RI
Sbjct: 21  KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 511 REYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWY 395
           +E  V+   +  E     P   +R +SP+ ++  S FWY
Sbjct: 470 QEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +2

Query: 53  WCTRFGQWESDGAVVELFDLWTATRSSLDY 142
           W      WE  G  V+ +  W A   S DY
Sbjct: 138 WPVHRTLWEKLGVTVDTYPYWDAKNRSFDY 167


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 427 DPIVAKSRFWYFLRQLKKFK 368
           D ++   RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 404 TRFGDNWIRRENSHFIQGRFGLVLRRELTADN 499
           ++F DN++  ++      R G+ L REL  D+
Sbjct: 3   SQFNDNFVATDDDVGTMARVGMALDRELNGDS 34


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 356  TSGLLELLKLSQEIPETRFGDNWIRRENSH 445
            TSG L LL    E PE+  G+  + R + H
Sbjct: 1274 TSGNLRLLAYDPENPESHSGERLVTRGDFH 1303


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 460 PPLYKMRIFSPDPIVAKSRFWYFL 389
           PP     +  P  +  K +FWY++
Sbjct: 534 PPKSNAELVDPSTLSGKDKFWYYI 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,558
Number of Sequences: 5004
Number of extensions: 47555
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)