Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m21
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 163 7e-41
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 161 3e-40
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 141 3e-34
01_06_0048 + 25951544-25952074 28 4.7
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 28 6.2
11_01_0129 - 1073002-1073073,1073463-1073585,1073667-1073732,107... 27 8.2
03_05_1115 + 30506986-30507396 27 8.2
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 163 bits (397), Expect = 7e-41
Identities = 70/149 (46%), Positives = 101/149 (67%)
Frame = -1
Query: 517 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 338
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64
Query: 337 XXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 158
KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 157 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 71
IIK + C+R KQFHNS I+FPL
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHNSNIKFPL 153
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 161 bits (392), Expect = 3e-40
Identities = 70/149 (46%), Positives = 100/149 (67%)
Frame = -1
Query: 517 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 338
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I+
Sbjct: 5 RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAIN 64
Query: 337 XXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 158
KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 157 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 71
IIK + C+R KQFH S I+FPL
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHKSDIKFPL 153
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 141 bits (342), Expect = 3e-34
Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 17/166 (10%)
Frame = -1
Query: 517 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFL 389
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFL
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFL 64
Query: 388 RQLKKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQ 209
R+LKK KK+ G+++ KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q
Sbjct: 65 RKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQ 124
Query: 208 CYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL 71
Y +M +RHR R IQIIK + C+R KQFHN +I+FPL
Sbjct: 125 MYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPL 170
>01_06_0048 + 25951544-25952074
Length = 176
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 390 RKYQKRDLATIGSGEKILILYKGGLGSFSDG 482
RKY D + G G L+ GG GS SDG
Sbjct: 24 RKYHSVDSSAAGRGTSNLVRLGGGSGSGSDG 54
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 394 NTRNEIWRQLDPERKFSFYTREVWARSPTGA 486
N + WRQ+ F + E W RSPT +
Sbjct: 715 NNMLDTWRQVTKNTMFDEWLNEWWKRSPTSS 745
>11_01_0129 -
1073002-1073073,1073463-1073585,1073667-1073732,
1074227-1074347,1074536-1074603,1074792-1074863,
1076045-1076222,1077554-1077888
Length = 344
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +2
Query: 290 PDTKILNLDGAFLWNFLNRDNFTSGLLELLKLSQEI 397
PD++I+ +DGAF D F +G +E+L+L++E+
Sbjct: 175 PDSRIVYIDGAF-------DLFHAGHVEILRLAREL 203
>03_05_1115 + 30506986-30507396
Length = 136
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 108 SNSSTTAPSDSHCPXRVHHYKRLNTFAYQ 22
S+SS+++PS P R HH++ +T + Q
Sbjct: 106 SSSSSSSPSPRAAPERHHHHRAPSTLSVQ 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,973
Number of Sequences: 37544
Number of extensions: 329891
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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