Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m21
(580 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 230 2e-60
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 230 2e-60
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 230 2e-60
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 230 2e-60
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 230 2e-60
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 230 2e-60
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 190 4e-48
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 144 3e-34
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 80 5e-15
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 230 bits (563), Expect = 2e-60
Identities = 107/155 (69%), Positives = 123/155 (79%)
Frame = -1
Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLP 68
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLP 155
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 230 bits (563), Expect = 2e-60
Identities = 107/155 (69%), Positives = 123/155 (79%)
Frame = -1
Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLP 68
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLP 155
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 230 bits (563), Expect = 2e-60
Identities = 107/155 (69%), Positives = 123/155 (79%)
Frame = -1
Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLP 68
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLP 155
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 230 bits (563), Expect = 2e-60
Identities = 107/155 (69%), Positives = 123/155 (79%)
Frame = -1
Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLP 68
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLP 155
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 230 bits (563), Expect = 2e-60
Identities = 107/155 (69%), Positives = 123/155 (79%)
Frame = -1
Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTAAGAVTQCYRDMGARHRAR 120
Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLP 68
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLP 155
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 230 bits (563), Expect = 2e-60
Identities = 107/155 (69%), Positives = 123/155 (79%)
Frame = -1
Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLP 68
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLP 155
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 190 bits (462), Expect = 4e-48
Identities = 89/135 (65%), Positives = 104/135 (77%)
Frame = -1
Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
MKA G LREY+V+GR+LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRRLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
V KNFGIWLR +SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 TVYCGQVFEKSPLRVKNFGIWLRCDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 172 AHSIQIIKVEVIKAA 128
AHSIQI+ VE I A+
Sbjct: 121 AHSIQIMMVEEIAAS 135
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 144 bits (348), Expect = 3e-34
Identities = 63/79 (79%), Positives = 69/79 (87%)
Frame = -1
Query: 304 NFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAA 125
NFGIWL Y+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I +
Sbjct: 41 NFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAVSK 100
Query: 124 CRRPQVKQFHNSTIRFPLP 68
CRRP VKQFH+S I+FPLP
Sbjct: 101 CRRPAVKQFHDSKIKFPLP 119
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 80.2 bits (189), Expect = 5e-15
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = -1
Query: 202 RDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLP 68
RDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLP 45
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,308,320
Number of Sequences: 237096
Number of extensions: 1695708
Number of successful extensions: 3350
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3350
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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