Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m21
         (580 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal prot...   251   6e-67
AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p pro...   251   6e-67
AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA...   251   6e-67
BT023059-1|AAY55475.1|  328|Drosophila melanogaster IP10969p pro...    35   0.069
AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p pro...    29   4.5  
AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-P...    29   4.5  
AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-P...    29   4.5  
AY047556-1|AAK77288.1|  606|Drosophila melanogaster GH06695p pro...    28   7.9  
AL035632-5|CAB38462.1|  606|Drosophila melanogaster EG:BACN32G11...    28   7.9  
AE014298-210|AAF45628.1|  606|Drosophila melanogaster CG14788-PA...    28   7.9  

>X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal protein
           L18a protein.
          Length = 177

 Score =  251 bits (614), Expect = 6e-67
 Identities = 119/154 (77%), Positives = 129/154 (83%)
 Frame = -1

Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
           M+AKG L+EYEV+GRKLPSE EP+ PLYKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
           IV             KNFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL 71
           AHSIQIIKV+ I AA  RR  VKQFH+S I+FPL
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPL 154


>AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p
           protein.
          Length = 177

 Score =  251 bits (614), Expect = 6e-67
 Identities = 119/154 (77%), Positives = 129/154 (83%)
 Frame = -1

Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
           M+AKG L+EYEV+GRKLPSE EP+ PLYKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
           IV             KNFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL 71
           AHSIQIIKV+ I AA  RR  VKQFH+S I+FPL
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPL 154


>AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA
           protein.
          Length = 177

 Score =  251 bits (614), Expect = 6e-67
 Identities = 119/154 (77%), Positives = 129/154 (83%)
 Frame = -1

Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
           M+AKG L+EYEV+GRKLPSE EP+ PLYKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
           IV             KNFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL 71
           AHSIQIIKV+ I AA  RR  VKQFH+S I+FPL
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPL 154


>BT023059-1|AAY55475.1|  328|Drosophila melanogaster IP10969p
           protein.
          Length = 328

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -1

Query: 532 MKAKGQLREYEVIGRKLP 479
           M+AKG L+EYEV+GRKLP
Sbjct: 1   MRAKGLLKEYEVVGRKLP 18


>AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p
           protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 207 ATEIWELDTEPELIQYRLSKWK*SRLLRVAVHRSNSSTTAPSDSH 73
           A   W + +   L+Q R + WK S LL   +   + S    S SH
Sbjct: 45  AKTFWMIISRQPLMQSRFTAWKFSHLLHKVLREGHESAIRHSQSH 89


>AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-PB,
           isoform B protein.
          Length = 1087

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 207 ATEIWELDTEPELIQYRLSKWK*SRLLRVAVHRSNSSTTAPSDSH 73
           A   W + +   L+Q R + WK S LL   +   + S    S SH
Sbjct: 8   AKTFWMIISRQPLMQSRFTAWKFSHLLHKVLREGHESAIRHSQSH 52


>AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-PA,
           isoform A protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 207 ATEIWELDTEPELIQYRLSKWK*SRLLRVAVHRSNSSTTAPSDSH 73
           A   W + +   L+Q R + WK S LL   +   + S    S SH
Sbjct: 45  AKTFWMIISRQPLMQSRFTAWKFSHLLHKVLREGHESAIRHSQSH 89


>AY047556-1|AAK77288.1|  606|Drosophila melanogaster GH06695p
           protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/77 (22%), Positives = 37/77 (48%)
 Frame = +2

Query: 347 DNFTSGLLELLKLSQEIPETRFGDNWIRRENSHFIQGRFGLVLRRELTADNLIFPQLSFS 526
           D   +G+L + ++   +P        I R   H ++ ++G+V+ + L  +++  P  S  
Sbjct: 403 DMLLNGILPIDQMRDHVPAVNLLCERIPR---HVLEDKYGIVIAKPLEGEDMERPPHSEE 459

Query: 527 LHFWSFYLKDFVSGNGK 577
           L     Y + F++ NG+
Sbjct: 460 LLLAYGYNRGFMTSNGQ 476


>AL035632-5|CAB38462.1|  606|Drosophila melanogaster EG:BACN32G11.5
           protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/77 (22%), Positives = 37/77 (48%)
 Frame = +2

Query: 347 DNFTSGLLELLKLSQEIPETRFGDNWIRRENSHFIQGRFGLVLRRELTADNLIFPQLSFS 526
           D   +G+L + ++   +P        I R   H ++ ++G+V+ + L  +++  P  S  
Sbjct: 403 DMLLNGILPIDQMRDHVPAVNLLCERIPR---HVLEDKYGIVIAKPLEGEDMERPPHSEE 459

Query: 527 LHFWSFYLKDFVSGNGK 577
           L     Y + F++ NG+
Sbjct: 460 LLLAYGYNRGFMTSNGQ 476


>AE014298-210|AAF45628.1|  606|Drosophila melanogaster CG14788-PA
           protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/77 (22%), Positives = 37/77 (48%)
 Frame = +2

Query: 347 DNFTSGLLELLKLSQEIPETRFGDNWIRRENSHFIQGRFGLVLRRELTADNLIFPQLSFS 526
           D   +G+L + ++   +P        I R   H ++ ++G+V+ + L  +++  P  S  
Sbjct: 403 DMLLNGILPIDQMRDHVPAVNLLCERIPR---HVLEDKYGIVIAKPLEGEDMERPPHSEE 459

Query: 527 LHFWSFYLKDFVSGNGK 577
           L     Y + F++ NG+
Sbjct: 460 LLLAYGYNRGFMTSNGQ 476


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,068,520
Number of Sequences: 53049
Number of extensions: 545982
Number of successful extensions: 1476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2296745289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)