Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m21
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   190   5e-49
Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  190 bits (464), Expect = 5e-49
 Identities = 85/155 (54%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
 Frame = -1

Query: 529 KAKGQ-LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
           KA G+ L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
           I+             KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLP 68
           A  I I+KV+ +KA   +R  +K FH++ IRFPLP
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLP 158


>Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical
           protein F26E4.7b protein.
          Length = 608

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 412 WRQLDPERKFSFY--TREVWARSPTGAYGR 495
           W+ L PE+ F+F+  T E W +  T    R
Sbjct: 451 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 480


>Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical
           protein F26E4.7a protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 412 WRQLDPERKFSFY--TREVWARSPTGAYGR 495
           W+ L PE+ F+F+  T E W +  T    R
Sbjct: 520 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,733
Number of Sequences: 27780
Number of extensions: 270383
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)