Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m20
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.75 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   0.99 
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    27   2.3  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.3  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    27   3.0  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    26   5.3  
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    25   7.0  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.0  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   7.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.2  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   9.2  

>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 447 ADFQVMFELGPQTNTMNLTGQPFSSSNNAKRHAPASPNGKINKNKEK 307
           AD+ V     PQ N   L   P S ++     + A P+ K+ +N  K
Sbjct: 177 ADYVVAEHFAPQRNDEQLGNSPASITSKPATTSAAQPSSKVEENMAK 223


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 216  PKPGEVPNLEDSMVELVKNDKGEYEIKQPNPGNMPQNVLDT 94
            P   E  NLE+   E+++N+  E E +QP     P+  ++T
Sbjct: 2191 PPALEKYNLENQKKEILENESKEEETRQPEVNIQPEEPINT 2231


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
 Frame = -1

Query: 528 SVAYSNIPPIKKGTDSRVGFGFAFGNHADFQVMFELGPQTNTMNLTGQPFSSSNNAKRHA 349
           S+ +S   P+   +  + G      N A  ++  E     +   L     +++ ++K H+
Sbjct: 152 SLTFSKTSPVSPSS-LKDGASNTVTNDASNKIKSEASESASPSALQALDSTAAGSSKEHS 210

Query: 348 -PASPNGKINKN-KEKY--LQSDASKYLQGWAQKMKHPQKQIPVRTPA-PKPGEVPN 193
            P     K  +N K++Y  +  +  KY+    ++++  +  IP R P  P    +P+
Sbjct: 211 SPHDETVKKEENDKDQYPPMTKEQHKYIHAMLRQLRRGRDSIPFRAPVDPVKQNIPD 267


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 270 WAQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVEL-VKNDKGEY 145
           WA ++ HP KQ P   P P    +       V L +K +  +Y
Sbjct: 151 WAHQLLHPNKQFPAIRPFPNEKSLVRHVARQVRLALKKNNNQY 193


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -1

Query: 417 PQTNTMNLTGQPFSSSNNAKRHAPASPNGKINKNKEKYLQSDASKYLQGWAQKM 256
           P +++ +L+G     + N+ + + ASP+     N  KY + +A K L  W   +
Sbjct: 375 PSSSSSSLSGSWHGDTENSVKQSLASPSEASLPNLSKYSRKNAKK-LNEWLDSL 427


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -1

Query: 510 IPPIKKGTDSRVGFGFAFGNHADFQVMFELGPQTNTMNLTGQPFSSSNNAKRHAPASPNG 331
           +PP  +   +   F F FG           GP  NT+    Q  SS+    +   +S N 
Sbjct: 64  LPPFDRFPGTNANF-FPFGAPFMLPPALMFGP--NTVPFFPQTASSNKTFSKRKRSSENS 120

Query: 330 KINKNKEKYLQ-SDASKYLQGWAQ 262
             N+NK K  + SD+S   Q + +
Sbjct: 121 FNNRNKAKSSETSDSSNTSQSFKE 144


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 331 QNKQKQGKVSTIGRKQIPPRLGAENEASPKANSREDAGS*ARRSAQP 191
           +N     + S +    + P  GAE+ +  K+ S    G+ A  SA+P
Sbjct: 124 RNSNSANEASAMAFHNVSPPSGAESSSESKSFSASGKGNKADTSAEP 170


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 339 PNGKINKNKEKYLQSDASKYLQGWAQK 259
           P GK+++ +E+  Q+   K  +GW  +
Sbjct: 41  PEGKVHETQEERCQNVKKKLFEGWLSR 67


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
 Frame = -1

Query: 315 KEKYLQSDASKYLQGWAQKMKHPQKQIPVRTPAP-----KPGEVPNLEDSMVELVKNDKG 151
           K K L +D       W +  +    +  V+  +P     +P + P+L     + + ND+ 
Sbjct: 12  KLKKLWNDTKNDYLEWERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRKNILNDQK 71

Query: 150 EYEIKQPNPGNMPQN 106
           + E   PN G   QN
Sbjct: 72  KDEESIPNAGTQSQN 86


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/73 (20%), Positives = 30/73 (41%)
 Frame = -1

Query: 543 LPSLLSVAYSNIPPIKKGTDSRVGFGFAFGNHADFQVMFELGPQTNTMNLTGQPFSSSNN 364
           +PS  S+ Y  I  + +G + ++G GF   +    ++             +G+ F+ S  
Sbjct: 107 IPSNTSIYYYEIQILSRGKEGKMGVGFCRKSMQTNRLPGCTAESWGYHGNSGEKFNCSKT 166

Query: 363 AKRHAPASPNGKI 325
            + + P    G I
Sbjct: 167 GEAYGPEFTTGDI 179


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 360  KRHAPASPNGKINKNK 313
            KRH P + NGK +KNK
Sbjct: 2637 KRHIPPTINGKRSKNK 2652


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 541 AIATICGLFEYTTNQERHRLESRFWLCLRQPCRF-PSNVRTWAANEHYEPDW 389
           ++   CG+   TT+QER+ +E     C +   R   +++RT A    Y P +
Sbjct: 501 SVVVPCGITNKTTDQERNEIEG---FCSKLADRLNAADIRTEADLRAYTPGY 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,072
Number of Sequences: 5004
Number of extensions: 57709
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)