Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m20
(639 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein... 33 1.1
U04811-1|AAA79334.2| 749|Homo sapiens trophinin protein. 31 2.6
D13644-1|BAA02807.2| 838|Homo sapiens KIAA0019 protein protein. 31 2.6
BC042943-1|AAH42943.1| 828|Homo sapiens USP6 N-terminal like pr... 31 2.6
AL590416-1|CAI16966.1| 828|Homo sapiens USP6 N-terminal like pr... 31 2.6
AL512631-1|CAH70484.1| 828|Homo sapiens USP6 N-terminal like pr... 31 2.6
AL049732-7|CAB86651.2| 1431|Homo sapiens trophinin protein. 31 2.6
AL049732-6|CAM26848.1| 1034|Homo sapiens trophinin protein. 31 2.6
AB029037-1|BAA83066.3| 1458|Homo sapiens KIAA1114 protein protein. 31 2.6
BC002702-1|AAH02702.1| 301|Homo sapiens solute carrier family 2... 31 4.6
AL161614-3|CAH72774.1| 301|Homo sapiens solute carrier family 2... 31 4.6
AL161614-2|CAH72773.1| 133|Homo sapiens solute carrier family 2... 31 4.6
AJ309943-1|CAC83972.1| 301|Homo sapiens mitochondrial ornithine... 31 4.6
AF177333-1|AAG17977.1| 301|Homo sapiens unknown protein. 31 4.6
AF112968-1|AAD45238.1| 301|Homo sapiens ornithine transporter p... 31 4.6
M29541-1|AAA59915.1| 344|Homo sapiens normal cross-reacting ant... 30 6.0
M18728-1|AAA59907.1| 344|Homo sapiens non-specific cross reacti... 30 6.0
M18216-1|AAA51739.1| 344|Homo sapiens NCA protein. 30 6.0
BT009774-1|AAP88776.1| 344|Homo sapiens carcinoembryonic antige... 30 6.0
BC005008-1|AAH05008.1| 344|Homo sapiens carcinoembryonic antige... 30 6.0
>AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein
complex 3 delta 1 subunit variant protein.
Length = 1284
Score = 32.7 bits (71), Expect = 1.1
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = -1
Query: 339 PNGKINKNKEKYLQSDASKYLQGWAQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVELVKN 160
P K K+KEK + K + A+ + P PAP P VP+ + V V
Sbjct: 913 PKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAPAPAPVPSTGELSVNTVTT 972
Query: 159 DKGEYE 142
K E E
Sbjct: 973 PKDECE 978
>U04811-1|AAA79334.2| 749|Homo sapiens trophinin protein.
Length = 749
Score = 31.5 bits (68), Expect = 2.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 167 TSSTIESSRLGTSPGLGAGVLTGICFWG 250
T+ST+ SS L TS G G + T +CF G
Sbjct: 192 TTSTVFSSALSTSTGFGGILSTSVCFGG 219
>D13644-1|BAA02807.2| 838|Homo sapiens KIAA0019 protein protein.
Length = 838
Score = 31.5 bits (68), Expect = 2.6
Identities = 29/120 (24%), Positives = 44/120 (36%)
Frame = -1
Query: 453 NHADFQVMFELGPQTNTMNLTGQPFSSSNNAKRHAPASPNGKINKNKEKYLQSDASKYLQ 274
+ ADFQ GPQ ++ + ++NA + K NK + +KY
Sbjct: 455 DEADFQRKLPSGPQDSSRQYNHAAANQNSNATSNIRKEFVPKWNKPSDVSATERTAKYTM 514
Query: 273 GWAQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVELVKNDKGEYEIKQPNPGNMPQNVLDT 94
+ HP + V P P V N+ M L D G+ N+P LD+
Sbjct: 515 EGKGRAAHP--ALAVTVPGPAEVRVSNVRPKMKALDAED-GKRGSTASQYDNVPGPELDS 571
>BC042943-1|AAH42943.1| 828|Homo sapiens USP6 N-terminal like
protein.
Length = 828
Score = 31.5 bits (68), Expect = 2.6
Identities = 29/120 (24%), Positives = 44/120 (36%)
Frame = -1
Query: 453 NHADFQVMFELGPQTNTMNLTGQPFSSSNNAKRHAPASPNGKINKNKEKYLQSDASKYLQ 274
+ ADFQ GPQ ++ + ++NA + K NK + +KY
Sbjct: 445 DEADFQRKLPSGPQDSSRQYNHAAANQNSNATSNIRKEFVPKWNKPSDVSATERTAKYTM 504
Query: 273 GWAQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVELVKNDKGEYEIKQPNPGNMPQNVLDT 94
+ HP + V P P V N+ M L D G+ N+P LD+
Sbjct: 505 EGKGRAAHP--ALAVTVPGPAEVRVSNVRPKMKALDAED-GKRGSTASQYDNVPGPELDS 561
>AL590416-1|CAI16966.1| 828|Homo sapiens USP6 N-terminal like
protein.
Length = 828
Score = 31.5 bits (68), Expect = 2.6
Identities = 29/120 (24%), Positives = 44/120 (36%)
Frame = -1
Query: 453 NHADFQVMFELGPQTNTMNLTGQPFSSSNNAKRHAPASPNGKINKNKEKYLQSDASKYLQ 274
+ ADFQ GPQ ++ + ++NA + K NK + +KY
Sbjct: 445 DEADFQRKLPSGPQDSSRQYNHAAANQNSNATSNIRKEFVPKWNKPSDVSATERTAKYTM 504
Query: 273 GWAQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVELVKNDKGEYEIKQPNPGNMPQNVLDT 94
+ HP + V P P V N+ M L D G+ N+P LD+
Sbjct: 505 EGKGRAAHP--ALAVTVPGPAEVRVSNVRPKMKALDAED-GKRGSTASQYDNVPGPELDS 561
>AL512631-1|CAH70484.1| 828|Homo sapiens USP6 N-terminal like
protein.
Length = 828
Score = 31.5 bits (68), Expect = 2.6
Identities = 29/120 (24%), Positives = 44/120 (36%)
Frame = -1
Query: 453 NHADFQVMFELGPQTNTMNLTGQPFSSSNNAKRHAPASPNGKINKNKEKYLQSDASKYLQ 274
+ ADFQ GPQ ++ + ++NA + K NK + +KY
Sbjct: 445 DEADFQRKLPSGPQDSSRQYNHAAANQNSNATSNIRKEFVPKWNKPSDVSATERTAKYTM 504
Query: 273 GWAQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVELVKNDKGEYEIKQPNPGNMPQNVLDT 94
+ HP + V P P V N+ M L D G+ N+P LD+
Sbjct: 505 EGKGRAAHP--ALAVTVPGPAEVRVSNVRPKMKALDAED-GKRGSTASQYDNVPGPELDS 561
>AL049732-7|CAB86651.2| 1431|Homo sapiens trophinin protein.
Length = 1431
Score = 31.5 bits (68), Expect = 2.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 167 TSSTIESSRLGTSPGLGAGVLTGICFWG 250
T+ST+ SS L TS G G + T +CF G
Sbjct: 874 TTSTVFSSALSTSTGFGGILSTSVCFGG 901
>AL049732-6|CAM26848.1| 1034|Homo sapiens trophinin protein.
Length = 1034
Score = 31.5 bits (68), Expect = 2.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 167 TSSTIESSRLGTSPGLGAGVLTGICFWG 250
T+ST+ SS L TS G G + T +CF G
Sbjct: 477 TTSTVFSSALSTSTGFGGILSTSVCFGG 504
>AB029037-1|BAA83066.3| 1458|Homo sapiens KIAA1114 protein protein.
Length = 1458
Score = 31.5 bits (68), Expect = 2.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 167 TSSTIESSRLGTSPGLGAGVLTGICFWG 250
T+ST+ SS L TS G G + T +CF G
Sbjct: 901 TTSTVFSSALSTSTGFGGILSTSVCFGG 928
>BC002702-1|AAH02702.1| 301|Homo sapiens solute carrier family 25
(mitochondrial carrier; ornithine transporter) member
protein.
Length = 301
Score = 30.7 bits (66), Expect = 4.6
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 77 PYKTIKVS-NTFCGIFPGLG--CFISYSPLSFLTSSTIESSRLGTSPGLGAGVLTGICFW 247
P+ T+KV TF ++ GL C +YS + F GTSP L A + +
Sbjct: 29 PFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGF------RGFYKGTSPALIANIAENSVLF 82
Query: 248 GCFIFCAQPWRYLLASD 298
C+ FC Q R + D
Sbjct: 83 MCYGFCQQVVRKVAGLD 99
>AL161614-3|CAH72774.1| 301|Homo sapiens solute carrier family 25
(mitochondrial carrier; ornithine transporter) member
protein.
Length = 301
Score = 30.7 bits (66), Expect = 4.6
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 77 PYKTIKVS-NTFCGIFPGLG--CFISYSPLSFLTSSTIESSRLGTSPGLGAGVLTGICFW 247
P+ T+KV TF ++ GL C +YS + F GTSP L A + +
Sbjct: 29 PFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGF------RGFYKGTSPALIANIAENSVLF 82
Query: 248 GCFIFCAQPWRYLLASD 298
C+ FC Q R + D
Sbjct: 83 MCYGFCQQVVRKVAGLD 99
>AL161614-2|CAH72773.1| 133|Homo sapiens solute carrier family 25
(mitochondrial carrier; ornithine transporter) member
protein.
Length = 133
Score = 30.7 bits (66), Expect = 4.6
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 77 PYKTIKVS-NTFCGIFPGLG--CFISYSPLSFLTSSTIESSRLGTSPGLGAGVLTGICFW 247
P+ T+KV TF ++ GL C +YS + F GTSP L A + +
Sbjct: 29 PFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGF------RGFYKGTSPALIANIAENSVLF 82
Query: 248 GCFIFCAQPWRYLLASD 298
C+ FC Q R + D
Sbjct: 83 MCYGFCQQVVRKVAGLD 99
>AJ309943-1|CAC83972.1| 301|Homo sapiens mitochondrial ornithine
carrier protein.
Length = 301
Score = 30.7 bits (66), Expect = 4.6
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 77 PYKTIKVS-NTFCGIFPGLG--CFISYSPLSFLTSSTIESSRLGTSPGLGAGVLTGICFW 247
P+ T+KV TF ++ GL C +YS + F GTSP L A + +
Sbjct: 29 PFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGF------RGFYKGTSPALIANIAENSVLF 82
Query: 248 GCFIFCAQPWRYLLASD 298
C+ FC Q R + D
Sbjct: 83 MCYGFCQQVVRKVAGLD 99
>AF177333-1|AAG17977.1| 301|Homo sapiens unknown protein.
Length = 301
Score = 30.7 bits (66), Expect = 4.6
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 77 PYKTIKVS-NTFCGIFPGLG--CFISYSPLSFLTSSTIESSRLGTSPGLGAGVLTGICFW 247
P+ T+KV TF ++ GL C +YS + F GTSP L A + +
Sbjct: 29 PFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGF------RGFYKGTSPALIANIAENSVLF 82
Query: 248 GCFIFCAQPWRYLLASD 298
C+ FC Q R + D
Sbjct: 83 MCYGFCQQVVRKVAGLD 99
>AF112968-1|AAD45238.1| 301|Homo sapiens ornithine transporter
protein.
Length = 301
Score = 30.7 bits (66), Expect = 4.6
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 77 PYKTIKVS-NTFCGIFPGLG--CFISYSPLSFLTSSTIESSRLGTSPGLGAGVLTGICFW 247
P+ T+KV TF ++ GL C +YS + F GTSP L A + +
Sbjct: 29 PFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGF------RGFYKGTSPALIANIAENSVLF 82
Query: 248 GCFIFCAQPWRYLLASD 298
C+ FC Q R + D
Sbjct: 83 MCYGFCQQVVRKVAGLD 99
>M29541-1|AAA59915.1| 344|Homo sapiens normal cross-reacting
antigen protein.
Length = 344
Score = 30.3 bits (65), Expect = 6.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 195 NLEDSMVELVKNDKGEYEIKQPNPGNMPQNVLDTLMVLYG 76
N+ +++ + +ND G YE + NP + ++ TL VLYG
Sbjct: 197 NMTLTLLSVKRNDAGSYECEIQNPASANRSDPVTLNVLYG 236
>M18728-1|AAA59907.1| 344|Homo sapiens non-specific cross reacting
antigen protein.
Length = 344
Score = 30.3 bits (65), Expect = 6.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 195 NLEDSMVELVKNDKGEYEIKQPNPGNMPQNVLDTLMVLYG 76
N+ +++ + +ND G YE + NP + ++ TL VLYG
Sbjct: 197 NMTLTLLSVKRNDAGSYECEIQNPASANRSDPVTLNVLYG 236
>M18216-1|AAA51739.1| 344|Homo sapiens NCA protein.
Length = 344
Score = 30.3 bits (65), Expect = 6.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 195 NLEDSMVELVKNDKGEYEIKQPNPGNMPQNVLDTLMVLYG 76
N+ +++ + +ND G YE + NP + ++ TL VLYG
Sbjct: 197 NMTLTLLSVKRNDAGSYECEIQNPASANRSDPVTLNVLYG 236
>BT009774-1|AAP88776.1| 344|Homo sapiens carcinoembryonic
antigen-related cell adhesion molecule 6 (non-specific
cross r protein.
Length = 344
Score = 30.3 bits (65), Expect = 6.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 195 NLEDSMVELVKNDKGEYEIKQPNPGNMPQNVLDTLMVLYG 76
N+ +++ + +ND G YE + NP + ++ TL VLYG
Sbjct: 197 NMTLTLLSVKRNDAGSYECEIQNPASANRSDPVTLNVLYG 236
>BC005008-1|AAH05008.1| 344|Homo sapiens carcinoembryonic
antigen-related cell adhesion molecule 6 (non-specific
cross r protein.
Length = 344
Score = 30.3 bits (65), Expect = 6.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 195 NLEDSMVELVKNDKGEYEIKQPNPGNMPQNVLDTLMVLYG 76
N+ +++ + +ND G YE + NP + ++ TL VLYG
Sbjct: 197 NMTLTLLSVKRNDAGSYECEIQNPASANRSDPVTLNVLYG 236
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,363,654
Number of Sequences: 237096
Number of extensions: 2143787
Number of successful extensions: 6139
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6115
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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