Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m20
(639 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X72577-1|CAA51169.1| 283|Apis mellifera Apidaecin precursor pro... 25 0.82
AF442148-1|AAL35349.1| 199|Apis mellifera apidaecin precursor p... 23 1.9
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 22 4.4
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 22 4.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 7.6
DQ091184-1|AAZ42364.1| 157|Apis mellifera lipophorin receptor p... 21 7.6
DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor p... 21 7.6
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 21 7.6
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 21 7.6
>X72577-1|CAA51169.1| 283|Apis mellifera Apidaecin precursor
protein.
Length = 283
Score = 24.6 bits (51), Expect = 0.82
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Frame = -1
Query: 345 ASPNGKINKNKEKYLQSDASKY--LQGWAQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVE 172
A P + N+ Y+ + L+ A+ P PV P P+P ++ +E
Sbjct: 35 AKPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAELE 94
Query: 171 LVKNDKGEYEIKQPNP 124
+ I QP P
Sbjct: 95 AEPGNNRPVYISQPRP 110
Score = 23.4 bits (48), Expect = 1.9
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Frame = -1
Query: 345 ASPNGKINKNKEKYLQSDASKY--LQGWAQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVE 172
A P + N+ Y+ + L+ A+ P PV P P+P ++ E
Sbjct: 203 AEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAKPE 262
Query: 171 LVKNDKGEYEIKQPNP 124
+ I QP P
Sbjct: 263 AKPGNNRPVYIPQPRP 278
Score = 21.8 bits (44), Expect = 5.8
Identities = 12/48 (25%), Positives = 18/48 (37%)
Frame = -1
Query: 267 AQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVELVKNDKGEYEIKQPNP 124
A+ P PV P P+P ++ +E + I QP P
Sbjct: 119 AEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGNNRPVYISQPRP 166
>AF442148-1|AAL35349.1| 199|Apis mellifera apidaecin precursor
protein.
Length = 199
Score = 23.4 bits (48), Expect = 1.9
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Frame = -1
Query: 345 ASPNGKINKNKEKYLQSDASKY--LQGWAQKMKHPQKQIPVRTPAPKPGEVPNLEDSMVE 172
A P + N+ Y+ + L+ A+ P PV P P+P ++ E
Sbjct: 91 AEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAKPE 150
Query: 171 LVKNDKGEYEIKQPNP 124
+ I QP P
Sbjct: 151 AEPGNNRPVYIPQPRP 166
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 22.2 bits (45), Expect = 4.4
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 631 NSGVQNGVNIILIWIF 584
N G +NG+ +L+WI+
Sbjct: 150 NGGPRNGLLPLLVWIY 165
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 22.2 bits (45), Expect = 4.4
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 631 NSGVQNGVNIILIWIF 584
N G +NG+ +L+WI+
Sbjct: 150 NGGPRNGLLPLLVWIY 165
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 7.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -3
Query: 610 VNIILIWIFAFFWVM 566
+ II IW+F+ W +
Sbjct: 170 IRIIAIWLFSLGWTI 184
>DQ091184-1|AAZ42364.1| 157|Apis mellifera lipophorin receptor
protein.
Length = 157
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 200 TSPGLGAGVLTGICFWGCFI 259
T PGL AG++ G+ G +
Sbjct: 128 TDPGLVAGIVIGVTSLGLLL 147
>DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor
protein.
Length = 128
Score = 21.4 bits (43), Expect = 7.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 200 TSPGLGAGVLTGICFWGCFI 259
T PGL AG++ G+ G +
Sbjct: 99 TDPGLVAGIVIGVTSLGLLL 118
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 21.4 bits (43), Expect = 7.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -3
Query: 610 VNIILIWIFAFFWVM 566
+ II IW+F+ W +
Sbjct: 136 IRIIAIWLFSLGWTI 150
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 21.4 bits (43), Expect = 7.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -3
Query: 610 VNIILIWIFAFFWVM 566
+ II IW+F+ W +
Sbjct: 46 IRIIAIWLFSLGWTI 60
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,521
Number of Sequences: 438
Number of extensions: 3970
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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