Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m19
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.3  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          26   5.3  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    26   5.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   7.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   7.0  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   9.3  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 475  LSLKSITKK--LQKHHVEESNQTRVLISVLNVMKNLLFTASKISIFSPL 335
            + + +IT K  LQK    ESN +R+L++   + K L    + ++   PL
Sbjct: 1155 VGIAAITTKSLLQKDFAAESNPSRLLLAARQMAKTLAGNLAMVTCREPL 1203


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 658 QEDQEKQEKYKALVKKITLNCHDLIY 581
           QEDQ+K+EK   L ++IT+    +I+
Sbjct: 13  QEDQDKREKIIRLSREITIQSKRMIF 38


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 656 GRPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNRTN 510
           G+   T K QS  EKD  K++ +  + +K   +      L L+D N  N
Sbjct: 24  GKRFVTEKSQSQEEKDTSKITENAKEEVKRDTSSLAKESLKLLDLNGLN 72


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 8   HSLKLPTVQHEQVDIFLVILPLSYTSATHKITAHN 112
           HS+ LP +   ++D+  + + LS  ++T  I+ HN
Sbjct: 489 HSIALPRLLRTKIDLCTLQISLSNPTSTVLISMHN 523


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 199  ADHLGTRRRRASGLCCYKSSFVYPWNVTQTSS 294
            +D + T    A   CC K   +YPWN    S+
Sbjct: 1488 SDIVSTLSNYACPDCCSKEGKLYPWNTRPRST 1519


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 475 LSLKSITKKLQKHHVEESN-QTRVLISVLNVMKNLLFTASKISIFSPL 335
           L+LK + K LQK  ++ESN Q   LIS + + K  + T   +     L
Sbjct: 803 LTLKELPKDLQKQILKESNLQKSDLISEVKLEKPHIVTFQHVQSLEDL 850


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,175
Number of Sequences: 5004
Number of extensions: 59116
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)