Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m19
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0139 + 12247051-12247155,12247250-12247327,12247412-122475...    30   1.8  
05_07_0132 + 27903236-27903376,27903498-27903659,27903755-279039...    29   5.5  
02_01_0428 - 3127098-3129254                                           29   5.5  
05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966...    28   9.6  
03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818...    28   9.6  
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875...    28   9.6  

>06_02_0139 +
           12247051-12247155,12247250-12247327,12247412-12247519,
           12247882-12247944,12248024-12248185,12248424-12248624,
           12248663-12248725,12248915-12249244,12249870-12250034,
           12250110-12251078
          Length = 747

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
 Frame = -1

Query: 481 MDLSLKSITKKLQKHHVEESNQTRVLISVLNVMKNLLFTASKISIFSPLFVKSF------ 320
           +DLS  SI   + +  V   N  RV   +L ++ N+L   S I  FS   + +       
Sbjct: 174 LDLSHDSILHNVDEQTVRSLNGCRVTDKILRLVPNILVCTSCIVYFSDDMLNALWWIRYD 233

Query: 319 --*FLTGYKINLTFALRSTGKRNSIYSN 242
              F + ++  L F +R   KR  +YSN
Sbjct: 234 GRLFASTFRTTLRF-MRFWAKRRGVYSN 260


>05_07_0132 +
           27903236-27903376,27903498-27903659,27903755-27903903,
           27903999-27904325,27905123-27905323,27906095-27906155,
           27906517-27906718,27906899-27907020,27907143-27907247,
           27907369-27907452
          Length = 517

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 529 ISVNITGLLSLSMF----LILCISDRDSLMLSFSRELCIFPVFL 648
           IS+N+  L  LS      L+LC S  D+L  +FSREL  + +++
Sbjct: 389 ISINLGPLEELSNLCKADLLLCESGGDNLAANFSRELADYIIYI 432


>02_01_0428 - 3127098-3129254
          Length = 718

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -1

Query: 505 IHSTSIH*MDLSLKSITKKLQKHHVEESNQTRVLISVLNVMKNLLFTA 362
           + STS+  +D+S   ++  LQ+   + S  T   + VLN+  N LFTA
Sbjct: 110 VSSTSLVILDISFNHLSGALQEFSAQISETTIRPLQVLNISSN-LFTA 156


>05_04_0393 -
           20895485-20895645,20895750-20896358,20896541-20896616,
           20896729-20896920,20897118-20897438,20897880-20898119,
           20898205-20898522,20898621-20898678,20898778-20898936,
           20900090-20900308,20900400-20900614
          Length = 855

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 268 GKRNSIYSNTGHWRAVFVFRGDPRV 194
           G+R S  S+  HW  V ++RG P V
Sbjct: 754 GRRQSARSDGAHWPRVSIYRGHPFV 778


>03_02_0406 +
           8182870-8184262,8184376-8184452,8184809-8184920,
           8185064-8185071,8185633-8186217
          Length = 724

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 691 LI*ENSQKIKGQEDQEKQEKYKALVKKITLNCHDLIYKELK 569
           LI E +      ED E+ +  + L+  +  NCHD   +E+K
Sbjct: 654 LIPEVASMSSSSEDDEENDHSEPLMASVEHNCHDQSSEEMK 694


>02_04_0657 +
           24786717-24786924,24786925-24786965,24787379-24787521,
           24787597-24787774,24788054-24788123,24788197-24788345,
           24788491-24788586,24789213-24789283,24789879-24789940,
           24790175-24790238,24790326-24790410,24790515-24790641,
           24790714-24790775,24790863-24790923,24790987-24791147,
           24791355-24791648
          Length = 623

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 596 SRSDIQRIKNMLNESRPVMLTLMDPNRTNLYP 501
           SR+     K +L+ SRP     +DPNR+NL P
Sbjct: 539 SRNGSTSRKALLSSSRPSSGDPIDPNRSNLIP 570


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,393,907
Number of Sequences: 37544
Number of extensions: 313541
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)