Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m17
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 323 1e-88
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 323 1e-88
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 323 1e-88
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 100 1e-21
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 56 4e-08
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 52 5e-07
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 52 5e-07
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 52 5e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 50 3e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 50 3e-06
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 38 0.011
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 38 0.011
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 37 0.020
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.75
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 31 0.75
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 1.00
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 2.3
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 2.3
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 4.0
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 7.0
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 7.0
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 7.0
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 323 bits (793), Expect = 1e-88
Identities = 149/189 (78%), Positives = 166/189 (87%)
Frame = -1
Query: 823 VYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 644
VYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNV
Sbjct: 219 VYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNV 278
Query: 643 KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKF 464
KNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF
Sbjct: 279 KNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKF 338
Query: 463 AEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQT 284
E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQT
Sbjct: 339 NELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQT 398
Query: 283 VAVGVIKAV 257
VAVGVIK+V
Sbjct: 399 VAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 323 bits (793), Expect = 1e-88
Identities = 149/189 (78%), Positives = 166/189 (87%)
Frame = -1
Query: 823 VYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 644
VYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNV
Sbjct: 253 VYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNV 312
Query: 643 KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKF 464
KNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF
Sbjct: 313 KNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKF 372
Query: 463 AEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQT 284
E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQT
Sbjct: 373 NELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQT 432
Query: 283 VAVGVIKAV 257
VAVGVIK+V
Sbjct: 433 VAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 323 bits (793), Expect = 1e-88
Identities = 149/189 (78%), Positives = 166/189 (87%)
Frame = -1
Query: 823 VYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 644
VYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNV
Sbjct: 253 VYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNV 312
Query: 643 KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKF 464
KNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF
Sbjct: 313 KNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKF 372
Query: 463 AEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQT 284
E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQT
Sbjct: 373 NELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQT 432
Query: 283 VAVGVIKAV 257
VAVGVIK+V
Sbjct: 433 VAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 100 bits (240), Expect = 1e-21
Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Frame = -1
Query: 817 KIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 638
K +GTV +G++E+G ++ G +V P +V + + V GDN+ F +K
Sbjct: 347 KYSEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKG 406
Query: 637 VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 458
+ EL+ G++ S ++ K F A+V+VL H I++GY+ VL +A
Sbjct: 407 IEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKG 465
Query: 457 IKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 278
+ +D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A
Sbjct: 466 VIATIDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIA 523
Query: 277 VG-VIKAV 257
+G V+K V
Sbjct: 524 IGKVLKVV 531
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 55.6 bits (128), Expect = 4e-08
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Frame = -1
Query: 823 VYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQEAVPGDNV 656
+Y + G+GT+ G + +G ++ I++ P + + +KS+ + G +
Sbjct: 380 IYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCGQSA 439
Query: 655 GFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 476
F +K + K++R+G V D K P F A+++VL+HP I Y +L +
Sbjct: 440 SFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAMLHIGSVRQ 498
Query: 475 ACKFAEIKEKVDRRTGKSTEVNPKSIK 395
+ ++V RTG +V K I+
Sbjct: 499 TATLVSMGKEV-LRTGDRDKVQFKFIR 524
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 52.0 bits (119), Expect = 5e-07
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 6/195 (3%)
Frame = -1
Query: 823 VYKIGGIGTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDN 659
VY I G GTV G++E G+LK G I + T VKSV E + + +A PGD
Sbjct: 259 VYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQ 318
Query: 658 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 479
+G ++ + K++RRG V + + K AQ+ VL TP+ + + H
Sbjct: 319 LGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEH 375
Query: 478 IACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 302
+ + +G S + K + G++A V L + + +E P RF +
Sbjct: 376 VF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRFTI 421
Query: 301 RDMRQTVAVGVIKAV 257
R +T+ GV V
Sbjct: 422 RKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 52.0 bits (119), Expect = 5e-07
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 6/195 (3%)
Frame = -1
Query: 823 VYKIGGIGTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDN 659
VY I G GTV G++E G+LK G I + T VKSV E + + +A PGD
Sbjct: 260 VYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQ 319
Query: 658 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 479
+G ++ + K++RRG V + + K AQ+ VL TP+ + + H
Sbjct: 320 LGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEH 376
Query: 478 IACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 302
+ + +G S + K + G++A V L + + +E P RF +
Sbjct: 377 VF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRFTI 422
Query: 301 RDMRQTVAVGVIKAV 257
R +T+ GV V
Sbjct: 423 RKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 52.0 bits (119), Expect = 5e-07
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 6/195 (3%)
Frame = -1
Query: 823 VYKIGGIGTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDN 659
VY I G GTV G++E G+LK G I + T VKSV E + + +A PGD
Sbjct: 260 VYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQ 319
Query: 658 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 479
+G ++ + K++RRG V + + K AQ+ VL TP+ + + H
Sbjct: 320 LGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEH 376
Query: 478 IACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 302
+ + +G S + K + G++A V L + + +E P RF +
Sbjct: 377 VF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRFTI 422
Query: 301 RDMRQTVAVGVIKAV 257
R +T+ GV V
Sbjct: 423 RKGAKTIGTGVFTDV 437
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 49.6 bits (113), Expect = 3e-06
Identities = 36/190 (18%), Positives = 80/190 (42%), Gaps = 1/190 (0%)
Frame = -1
Query: 823 VYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 644
V K+ V G++E+G ++ V+ +++T +++ + GD + +
Sbjct: 400 VLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYILLTL 458
Query: 643 KNVSVKE-LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 467
+ E ++ G V + + + F +++ I G L H+ + C
Sbjct: 459 QGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCT 518
Query: 466 FAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 287
F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 519 FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGN 578
Query: 286 TVAVGVIKAV 257
T+A G+++ V
Sbjct: 579 TIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 49.6 bits (113), Expect = 3e-06
Identities = 36/190 (18%), Positives = 80/190 (42%), Gaps = 1/190 (0%)
Frame = -1
Query: 823 VYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 644
V K+ V G++E+G ++ V+ +++T +++ + GD + +
Sbjct: 418 VLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYILLTL 476
Query: 643 KNVSVKE-LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 467
+ E ++ G V + + + F +++ I G L H+ + C
Sbjct: 477 QGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCT 536
Query: 466 FAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 287
F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 537 FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGN 596
Query: 286 TVAVGVIKAV 257
T+A G+++ V
Sbjct: 597 TIAAGIVEKV 606
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.011
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -1
Query: 814 IGGIGTVPVGRVETGVLKPGTIVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVK 641
I G GTV VG +E GVLK G V + T +++ ++++E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 640 NVSVKELRRGYVAG 599
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.011
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -1
Query: 814 IGGIGTVPVGRVETGVLKPGTIVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVK 641
I G GTV VG +E GVLK G V + T +++ ++++E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 640 NVSVKELRRGYVAG 599
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 36.7 bits (81), Expect = 0.020
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = -1
Query: 823 VYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITT----EVKSVEMHHEALQEAVPGDNV 656
+Y + +G V G + G L G V+ P T V S+ +A+ PG+
Sbjct: 410 LYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPGEAA 469
Query: 655 GFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
++ LRRG V + + PP +FTA +++L H
Sbjct: 470 SISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -1
Query: 820 YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 644
+ I G GTV G V GVL+ T + F N VK++E + + + G F V
Sbjct: 210 FAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -1
Query: 820 YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 644
+ I G GTV G V GVL+ T + F N VK++E + + + G F V
Sbjct: 169 FAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 227
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 1.00
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = +3
Query: 540 STMT*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPG-TASWRASWCISTDLT 716
ST T A+ + P ++ P + FT +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 717 SVVMLAGAKTTMVPGFN--TPVSTLPTGTVPIPPILY 821
V + + VP + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.9 bits (64), Expect = 2.3
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Frame = +3
Query: 531 GWLSTMT*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASW---CI 701
G ST T A S AP GGLF + T P + T F T +P T
Sbjct: 446 GASSTTTPA--STAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAAT 503
Query: 702 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIP 809
+T + L +T+ + P +T T T+P P
Sbjct: 504 TTTPATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = +3
Query: 549 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVM 728
T A +AAP GGLF + T P T F T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 729 LAGAKTTMVPGFNTPVSTLPT 791
+ T+ +P P PT
Sbjct: 528 TTTSTTSTLP---KPAEATPT 545
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 763 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 638
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 141 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 296
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 195 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 347
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 499 LDCHTAHIACKFAEIKEKVDRRTGKSTE 416
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 499 LDCHTAHIACKFAEIKEKVDRRTGKSTE 416
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 499 LDCHTAHIACKFAEIKEKVDRRTGKSTE 416
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,362,204
Number of Sequences: 27780
Number of extensions: 424747
Number of successful extensions: 1296
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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