Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m16
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0791 - 32026086-32026944,32027044-32027600,32027686-320279...    28   4.0  
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505...    27   5.3  
01_05_0502 + 22771428-22771466,22772327-22772430,22773043-227731...    27   5.3  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    27   9.3  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    27   9.3  
02_05_1119 - 34248772-34249989                                         27   9.3  

>01_06_0791 -
           32026086-32026944,32027044-32027600,32027686-32027903,
           32028171-32028261
          Length = 574

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 357 KEQEQNTAKLVMNAFYSVDGKNGVTAADITKYLQEKFGDVWKVSALV 217
           KE+     ++  NA+Y   G   + A  +  Y+Q+  G  WKV   V
Sbjct: 173 KERRSRILQVYFNAYYGSIGVAFMVAVTVVVYVQDNLG--WKVGLAV 217


>08_02_0743 -
           20647440-20647927,20647997-20648426,20650127-20650570,
           20650639-20650692
          Length = 471

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -1

Query: 333 KLVMNAFYSVDGKNGVTAADITKYLQEKFGDVWKVSALVGKAE-ETLKRSAQLGFL 169
           ++++ A   ++ K+G   + I+K+++ K+GD+    A +  A    +K S +L FL
Sbjct: 18  EMILAAIEGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAHLARMKESGELIFL 73


>01_05_0502 +
           22771428-22771466,22772327-22772430,22773043-22773129,
           22773212-22773287,22773393-22773467,22773639-22773692,
           22773745-22773918,22774002-22774061,22774135-22774251,
           22774448-22774542,22774811-22775013,22775177-22775274,
           22775451-22775587,22776154-22776219,22776300-22776465,
           22776537-22776659,22776763-22776845,22776943-22777084,
           22777334-22777363,22777587-22777657,22777742-22778333
          Length = 863

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +3

Query: 93  SLTPTLCASRIYHGLF*KYTALRVCPRSQAVHSSSKFPRLFQLKRLLSIRLQIFPVNIS 269
           SL   +C+      LF ++      P+S  VHS S    L   KRL S   Q F  N+S
Sbjct: 285 SLAAKICSPSFVGRLF-RHALEESRPKSVLVHSLSVCISLLDPKRLASASYQAFRSNLS 342


>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 234 KVSALVGKAEETLKRSAQLGFLDKRGERYISKIAR 130
           K+  + GK E  +++  QLG  D+R +  I  I R
Sbjct: 381 KIDKIQGKLEHLVRQMEQLGLYDERQQFIIESINR 415


>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 93   SLTPTLCASRIYHGLF*KYTALRVCPRSQAVHSSSKFPRLFQLKRLLSIRLQIFPVNIS 269
            +L   +C+      LF ++      P+S  VHS S    L   KRL S   Q F  N+S
Sbjct: 1503 ALAAKICSPSFVGRLF-RHALQESRPKSVLVHSLSVCISLLDPKRLASASYQAFRSNLS 1560


>02_05_1119 - 34248772-34249989
          Length = 405

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 283 GGGYNEIFTGKIWRRMESKRFSWKSRGNFEEECTAWL 173
           GGG      G+ WRR E++R   ++ G    E  AW+
Sbjct: 79  GGGVVGCLRGR-WRRCEARRGIARAAGGVAGEIQAWI 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,152,411
Number of Sequences: 37544
Number of extensions: 243108
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)