Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11m16
(453 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL360169-2|CAI16560.1| 678|Homo sapiens RP3-442A17.1 protein. 35 0.15
AL360169-1|CAI16559.1| 1543|Homo sapiens RP3-442A17.1 protein. 35 0.15
AL353800-2|CAI20994.1| 678|Homo sapiens RP3-442A17.1 protein. 35 0.15
AL353800-1|CAI20993.1| 1543|Homo sapiens RP3-442A17.1 protein. 35 0.15
AF288480-1|AAG01020.1| 678|Homo sapiens tubby super-family prot... 35 0.15
AF219946-1|AAF87975.1| 1544|Homo sapiens tubby super-family prot... 35 0.15
AB037818-1|BAA92635.1| 686|Homo sapiens KIAA1397 protein protein. 35 0.15
D84296-1|BAA12303.1| 1715|Homo sapiens TPRDIII protein. 29 9.8
D84295-1|BAA12302.1| 1792|Homo sapiens possible protein TPRDII p... 29 9.8
D84294-1|BAA12301.1| 2025|Homo sapiens TPRDI protein. 29 9.8
D83327-1|BAA23666.1| 1941|Homo sapiens DCRR1 protein. 29 9.8
D83077-1|BAA11769.1| 2025|Homo sapiens TPRD protein. 29 9.8
AB209390-1|BAD92627.1| 347|Homo sapiens fibroblast growth facto... 29 9.8
>AL360169-2|CAI16560.1| 678|Homo sapiens RP3-442A17.1 protein.
Length = 678
Score = 34.7 bits (76), Expect = 0.15
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 104 DALRIPHIPRAILEIYRSPRLS-KKPSCALLFKVSSAFPTKALTFH------TSPNFSCK 262
+A + P +PRA E+ RSPRL +KPS FP + +T H TS + K
Sbjct: 548 EARKSPKLPRAAQELSRSPRLPLRKPSVGSPSLTRREFPFEDITQHNYLAQVTSNIWGTK 607
Query: 263 YFVISAAVTPFLPSTL 310
+ ++ A FLP+ L
Sbjct: 608 FKIVGLAA--FLPTNL 621
>AL360169-1|CAI16559.1| 1543|Homo sapiens RP3-442A17.1 protein.
Length = 1543
Score = 34.7 bits (76), Expect = 0.15
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 104 DALRIPHIPRAILEIYRSPRLS-KKPSCALLFKVSSAFPTKALTFH------TSPNFSCK 262
+A + P +PRA E+ RSPRL +KPS FP + +T H TS + K
Sbjct: 548 EARKSPKLPRAAQELSRSPRLPLRKPSVGSPSLTRREFPFEDITQHNYLAQVTSNIWGTK 607
Query: 263 YFVISAAVTPFLPSTL 310
+ ++ A FLP+ L
Sbjct: 608 FKIVGLAA--FLPTNL 621
>AL353800-2|CAI20994.1| 678|Homo sapiens RP3-442A17.1 protein.
Length = 678
Score = 34.7 bits (76), Expect = 0.15
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 104 DALRIPHIPRAILEIYRSPRLS-KKPSCALLFKVSSAFPTKALTFH------TSPNFSCK 262
+A + P +PRA E+ RSPRL +KPS FP + +T H TS + K
Sbjct: 548 EARKSPKLPRAAQELSRSPRLPLRKPSVGSPSLTRREFPFEDITQHNYLAQVTSNIWGTK 607
Query: 263 YFVISAAVTPFLPSTL 310
+ ++ A FLP+ L
Sbjct: 608 FKIVGLAA--FLPTNL 621
>AL353800-1|CAI20993.1| 1543|Homo sapiens RP3-442A17.1 protein.
Length = 1543
Score = 34.7 bits (76), Expect = 0.15
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 104 DALRIPHIPRAILEIYRSPRLS-KKPSCALLFKVSSAFPTKALTFH------TSPNFSCK 262
+A + P +PRA E+ RSPRL +KPS FP + +T H TS + K
Sbjct: 548 EARKSPKLPRAAQELSRSPRLPLRKPSVGSPSLTRREFPFEDITQHNYLAQVTSNIWGTK 607
Query: 263 YFVISAAVTPFLPSTL 310
+ ++ A FLP+ L
Sbjct: 608 FKIVGLAA--FLPTNL 621
>AF288480-1|AAG01020.1| 678|Homo sapiens tubby super-family protein
protein.
Length = 678
Score = 34.7 bits (76), Expect = 0.15
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 104 DALRIPHIPRAILEIYRSPRLS-KKPSCALLFKVSSAFPTKALTFH------TSPNFSCK 262
+A + P +PRA E+ RSPRL +KPS FP + +T H TS + K
Sbjct: 548 EARKSPKLPRAAQELSRSPRLPLRKPSVGSPSLTRREFPFEDITQHNYLAQVTSNIWGTK 607
Query: 263 YFVISAAVTPFLPSTL 310
+ ++ A FLP+ L
Sbjct: 608 FKIVGLAA--FLPTNL 621
>AF219946-1|AAF87975.1| 1544|Homo sapiens tubby super-family protein
protein.
Length = 1544
Score = 34.7 bits (76), Expect = 0.15
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 104 DALRIPHIPRAILEIYRSPRLS-KKPSCALLFKVSSAFPTKALTFH------TSPNFSCK 262
+A + P +PRA E+ RSPRL +KPS FP + +T H TS + K
Sbjct: 548 EARKSPKLPRAAQELSRSPRLPLRKPSVGSPSLTRREFPFEDITQHNYLAQVTSNIWGTK 607
Query: 263 YFVISAAVTPFLPSTL 310
+ ++ A FLP+ L
Sbjct: 608 FKIVGLAA--FLPTNL 621
>AB037818-1|BAA92635.1| 686|Homo sapiens KIAA1397 protein protein.
Length = 686
Score = 34.7 bits (76), Expect = 0.15
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 104 DALRIPHIPRAILEIYRSPRLS-KKPSCALLFKVSSAFPTKALTFH------TSPNFSCK 262
+A + P +PRA E+ RSPRL +KPS FP + +T H TS + K
Sbjct: 556 EARKSPKLPRAAQELSRSPRLPLRKPSVGSPSLTRREFPFEDITQHNYLAQVTSNIWGTK 615
Query: 263 YFVISAAVTPFLPSTL 310
+ ++ A FLP+ L
Sbjct: 616 FKIVGLAA--FLPTNL 629
>D84296-1|BAA12303.1| 1715|Homo sapiens TPRDIII protein.
Length = 1715
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 432 FVIQHLINI*NVIASHLNLHKMSNMKEQEQNTAKLV--MNAF 313
+VI+HLI N + + + LH +S +KE E A + +N+F
Sbjct: 562 YVIRHLIQENNRVKTRIFLHVLSELKEVEPKLAAWIQKLNSF 603
>D84295-1|BAA12302.1| 1792|Homo sapiens possible protein TPRDII
protein.
Length = 1792
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 432 FVIQHLINI*NVIASHLNLHKMSNMKEQEQNTAKLV--MNAF 313
+VI+HLI N + + + LH +S +KE E A + +N+F
Sbjct: 639 YVIRHLIQENNRVKTRIFLHVLSELKEVEPKLAAWIQKLNSF 680
>D84294-1|BAA12301.1| 2025|Homo sapiens TPRDI protein.
Length = 2025
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 432 FVIQHLINI*NVIASHLNLHKMSNMKEQEQNTAKLV--MNAF 313
+VI+HLI N + + + LH +S +KE E A + +N+F
Sbjct: 872 YVIRHLIQENNRVKTRIFLHVLSELKEVEPKLAAWIQKLNSF 913
>D83327-1|BAA23666.1| 1941|Homo sapiens DCRR1 protein.
Length = 1941
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 432 FVIQHLINI*NVIASHLNLHKMSNMKEQEQNTAKLV--MNAF 313
+VI+HLI N + + + LH +S +KE E A + +N+F
Sbjct: 788 YVIRHLIQENNRVKTRIFLHVLSELKEVEPKLAAWIQKLNSF 829
>D83077-1|BAA11769.1| 2025|Homo sapiens TPRD protein.
Length = 2025
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 432 FVIQHLINI*NVIASHLNLHKMSNMKEQEQNTAKLV--MNAF 313
+VI+HLI N + + + LH +S +KE E A + +N+F
Sbjct: 872 YVIRHLIQENNRVKTRIFLHVLSELKEVEPKLAAWIQKLNSF 913
>AB209390-1|BAD92627.1| 347|Homo sapiens fibroblast growth factor
11 variant protein.
Length = 347
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 119 PHIPRAILEIYRSPRLSKKPSCALLFKVSSAFPT 220
P +PR L++ R P L SC L FK + P+
Sbjct: 257 PALPRVSLQLPRQPALYAPSSCDLRFKNGAGHPS 290
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,235,208
Number of Sequences: 237096
Number of extensions: 1295149
Number of successful extensions: 6882
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6882
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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