Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11m16
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical p...    27   8.4  

>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
           protein ZK455.2 protein.
          Length = 1118

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 292 WRDGGGYNEIFTGK-IWRRMESKRF 221
           + DGGGYN    G  IW RM +++F
Sbjct: 376 FEDGGGYNVHMNGSLIWSRMTNRQF 400


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
            protein K09F6.3 protein.
          Length = 1360

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 119  PHIPRAILEIYRSPRLSKK--PSCALLFKVSSAFPTKALTFHTSP-NFS-CKYFV 271
            P +PR IL I+R  R SK     C+     S+AF +  L +H  P NF  C + V
Sbjct: 1144 PELPREILNIFRVARNSKSLVVHCSNGIGRSAAFVSWELCYHFVPVNFEICDFSV 1198


>Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical
           protein T10C6.3 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = +2

Query: 179 SCALLFKV--SSAFPTKALTFHTSPNFSCKYFVISAAVTPFLPSTL*NAFMTSFAVFCSC 352
           +CA L     S +F T  +  +  P  S  Y   + ++   LP  L +  + SF  FC+C
Sbjct: 65  NCAQLMACINSGSFSTLGVLLNIKPVLSISYLFGNFSIF-LLPVILISFLLMSFNRFCAC 123

Query: 353 SFMFDILCKFK*DAI-TFYIF 412
            F       F    I TF +F
Sbjct: 124 FFPLRYQNLFSSSMIRTFIVF 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,538,763
Number of Sequences: 27780
Number of extensions: 211833
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)